Gene
RNA
| Item | Value |
|---|---|
| gene id | G681592 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 6471995 ~ 6478999 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU802548 | False | 1073 | lncRNA | 0.46 | 2 | 6471995 | 6474784 |
| TU802554 | False | 817 | lncRNA | 0.53 | 4 | 6471995 | 6478999 |
| TU802553 | True | 1533 | TUCP | 0.55 | 4 | 6473035 | 6478999 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01180000_06369051_06375352 | NA | coding | upstream | 94742 | 6368381 ~ 6377253 (+) |
| CI01180000_06183820_06187700 | NA | coding | upstream | 284094 | 6182149 ~ 6187901 (+) |
| CI01180000_06060886_06073483 | NA | coding | upstream | 397773 | 6059381 ~ 6074222 (+) |
| CI01180000_05928275_05933064 | NA | coding | upstream | 538743 | 5927492 ~ 5945665 (+) |
| CI01180000_05919195_05919836 | NA | coding | upstream | 551548 | 5918105 ~ 5920447 (+) |
| CI01180000_06503211_06517041 | NA | coding | downstream | 24212 | 6503211 ~ 6517102 (+) |
| CI01180000_06532667_06556697 | VWC2 | coding | downstream | 53277 | 6532276 ~ 6557504 (+) |
| CI01180000_06581704_06589445 | NA | coding | downstream | 101991 | 6580990 ~ 6589481 (+) |
| CI01180000_06608734_06626459 | IKAROS, IKZF1 | coding | downstream | 129735 | 6608734 ~ 6626812 (+) |
| CI01180000_06638215_06643427 | TTL | coding | downstream | 158810 | 6637809 ~ 6643820 (+) |
| G681591 | NA | non-coding | upstream | 4771 | 6442303 ~ 6467224 (+) |
| G681606 | NA | non-coding | upstream | 68063 | 6397518 ~ 6403932 (+) |
| G681540 | NA | non-coding | upstream | 88182 | 6270150 ~ 6383813 (+) |
| G681537 | NA | non-coding | upstream | 209063 | 6258809 ~ 6262932 (+) |
| G681521 | NA | non-coding | upstream | 263986 | 6207092 ~ 6208009 (+) |
| G681682 | NA | non-coding | downstream | 150826 | 6629825 ~ 6630063 (+) |
| G681683 | NA | non-coding | downstream | 151331 | 6630330 ~ 6630546 (+) |
| G681685 | NA | non-coding | downstream | 152654 | 6631653 ~ 6631929 (+) |
| G681674 | NA | non-coding | downstream | 166109 | 6645108 ~ 6645323 (+) |
| G681652 | NA | non-coding | downstream | 166443 | 6645442 ~ 6646838 (+) |
| G681268 | NA | other | upstream | 1098233 | 5370410 ~ 5373762 (+) |
| G681137 | NA | other | upstream | 1686364 | 4783305 ~ 4785631 (+) |
| G680736 | NA | other | upstream | 2687554 | 3765691 ~ 3784441 (+) |
| CI01180000_03571292_03571611 | GNG2.L, GBG2, GNG2 | other | upstream | 2899598 | 3569165 ~ 3573135 (+) |
| CI01180000_02690045_02691641 | NKX6-2, NKX6-2.L, NKX6.2 | other | upstream | 3776559 | 2689271 ~ 2693221 (+) |
| G681686 | NA | other | downstream | 153909 | 6632908 ~ 6634989 (+) |
| G681667 | NA | other | downstream | 176847 | 6655846 ~ 6659546 (+) |
| CI01180000_07403482_07412752 | HELLS | other | downstream | 924148 | 7403482 ~ 7413190 (+) |
| CI01180000_07694615_07695428 | MRPL14 | other | downstream | 1184424 | 7694529 ~ 7695667 (+) |
| G682232 | NA | other | downstream | 1889186 | 8368185 ~ 8368935 (+) |
