XLOC_016347 (BX548024.1)


Basic Information

Item Value
gene id XLOC_016347
gene name BX548024.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23084639 ~ 23087324 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032201
AGACAAAGAGCTAAGTAAGCTAAGAAACAGAAAACCCAAGAGACCCCAAGACCTAAGGAAGAGACTTAAGcagagaaacctccaagaaagcaaACACCCCGGAAACCTAAGGCCAGAGAAAGGCTTGAACCCAGAGGACTCCAGGGAGCAGGCAGGGACCCAGACGAAATGGGTTAATCGCACAGCTCAGACATTCACATTTCTGATaccttattttctttatttaccaTCGAGAGTCTAGTTAGGTTTAGTGCCTCGCAAACCAGTAGTCATCACGACTGGCCCGCTGCCACTTTAACTTAAAACGACCGACTCCACCCCACTTCAAGACTCTCGAGGACCAAGAACAACCAGCCAGCCACGTGCTCAACAAAGAGAGCTTCTTCACATCACGGAGTAATGACTGGACCCATCCTCCTCCTGAAAGGGACGACCCTTCTCCCGCGTGCCCAAGTGAAACAGGAAGGTGAACACAGCTCCGATTCCCACTACGATAAGACTCAGATTCTGAGGGTGAAGAAATATTCCTGCATGAAGCTTATTAGAGGCATTAAGATCAGTGTATTATGACAATCTAGGTAAATGTCAACAGAAATCGAAAAGgctaatctataaaaaaaaaaaaaacttgttctcTATACACATTTAACAACAACACACCAGTTGCACAAGATGACAGATTTTGGTGTCTGCATCAGATTGACCTGAAAAAGGTATGAGTGTAAAATGGCATATTAAATGCCAGTTTTGAAATATGTAGACTTTCAACATCAAAATATAATGCAAAACAGGCAACCAGTGTAGCAGATATATTAATGTATAAAGGAAAAAAACATGTTCTGATTTGTACtaatttaagaaatatatataaaatataaagtgataaaaataaaatgttgcaacATGTGACCAAagactaaaaaataaacaagacatgtcactcctgtagttttgaatgggaaaaagtgtatatgg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097593

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032201 True 975 lncRNA 0.40 2 23084639 23087324

Neighbor

gene id symbol gene type direction distance location
XLOC_016346 NA coding downstream 57577 23025245 ~ 23027062 (-)
XLOC_016345 mllt1b coding downstream 80284 22970140 ~ 23004355 (-)
XLOC_016344 sap130b coding downstream 118512 22931159 ~ 22966127 (-)
XLOC_016342 myo7bb coding downstream 156681 22880605 ~ 22927958 (-)
XLOC_016343 BX649390.1 coding downstream 187238 22897285 ~ 22897401 (-)
XLOC_016348 prrx1a coding upstream 77926 23165250 ~ 23172708 (-)
XLOC_016349 niban1b coding upstream 208091 23295415 ~ 23349116 (-)
XLOC_016350 ivns1abpb coding upstream 292077 23379401 ~ 23391266 (-)
XLOC_016351 NA coding upstream 319148 23406472 ~ 23443189 (-)
XLOC_016352 si:ch73-129a22.11 coding upstream 319460 23406784 ~ 23411368 (-)
XLOC_016341 NA non-coding downstream 215919 22857105 ~ 22868720 (-)
XLOC_016340 NA non-coding downstream 232934 22845662 ~ 22851705 (-)
XLOC_016339 NA non-coding downstream 322184 22758806 ~ 22762455 (-)
XLOC_016369 NA non-coding upstream 939245 24026569 ~ 24069434 (-)
XLOC_016370 CR788285.1 non-coding upstream 988689 24076013 ~ 24105475 (-)
XLOC_016372 dre-mir-736 non-coding upstream 1173893 24261217 ~ 24261296 (-)
XLOC_016374 NA non-coding upstream 1223311 24310635 ~ 24317436 (-)

Expression


Co-expression Network