XLOC_016351


Basic Information

Item Value
gene id XLOC_016351
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23406472 ~ 23443189 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033823
ACGACCACAGTGATGTCCTCCAATCTCCCAGCACTGAACTGACCCTCCAAACTCCAGACCATGCTGCAGCTCAAAGTGTTGACGACGTCCCTACAGCCTGTGCCACGTCCGACTGTAGTGAGGATGATGTCCTTCAAGCTGCAGTGCCATCAGTTCCTCaggagaaggagaaaataattTTCGGTAAGTTTGCTACCTTGACACTCATTCAGTAATTCAGTGAACATTTACAGGTTTACTTCAGTTTAGTAGGGTGTAAGGATAAATAGTTCTGTTCAATTTTATTacagtttgaaataaaaaaaacaagcaaaacttaAAAAATGCTTGTGATTTTTGTTTACCgtttattactattaaaaaagtaaaagttagAGGACTAATAACGTGACAAAAGGATTTTtcagtcattaaaaaaaatggacAATAATTATTA
>TCONS_00032209
TACTCACAATCCACTGTAGTGTGAAGATATACGAAGACTTTCTTCGTCTTTACTGACAGTTATTTGTTCGTAGATTTGTGCTTTTTAAATTGGTAACTATTTactctttaaaatgtttacattactCGGAGTAATTGCTTTAGTCCTGCGGGGAAGGACAGAAAACAAACCCCACTCAGATCGAGAAGAACCCGTGGAGAAAAACTCTCCACCCACGATGACCAGTGATGGTCGAGATATTGGTGATAGGACTGAACACCTGTCATTGGAGGAACTAAGCACCAGTGGTTGTCCAGTCCATGTTGACGACCACAGTGATGTCCTCCAATCTCCCATCACTGCACCGACCCTCCAAACTCCAGACCATGCTGCAGCTCAAAGTGTTGACGACGTCCCTACAGCCTGTGCCACGTCCGACTGTAGTGAGGATGATGTCCTTCAAGCTGCAGTGCCTTTGCTAGCTGACTTGTGTGCACGTGTTCTTCAGGACACTGAGCCACAGTCATGCCAGCAGCAGGATATGGAGAAAACTGTGACTGgtCGAGATATTGATGATAGGACTGAATACCTGTTATCGGAGGAACTAAGCACCAGTGGTTGTCCAGTCCATGTTGACGACCACAGTGATGTCCTCCAATCTCCCAGCACTGAACTGACCCTCCAAACTCCAGACCATGCTGCAGCTCAAAGTGTTGACGACGTCCCTACAGCCTGTGCCACGTCCGACTGTAGTGAGGATGATGTCCTTCAAGCTGCAGTGCCATCAGTTCCTCaggagaaggagaaaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000113501

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033823 False 436 lncRNA 0.37 2 23406472 23438585
TCONS_00032209 True 789 mRNA 0.48 3 23438411 23443189

Neighbor

gene id symbol gene type direction distance location
XLOC_016350 ivns1abpb coding downstream 15206 23379401 ~ 23391266 (-)
XLOC_016349 niban1b coding downstream 57356 23295415 ~ 23349116 (-)
XLOC_016348 prrx1a coding downstream 233764 23165250 ~ 23172708 (-)
XLOC_016347 BX548024.1 coding downstream 319148 23084639 ~ 23087324 (-)
XLOC_016346 NA coding downstream 379410 23025245 ~ 23027062 (-)
XLOC_016353 si:ch211-14p21.3 coding upstream 32534 23475723 ~ 23479714 (-)
XLOC_016354 si:dkey-58b18.5 coding upstream 68405 23511594 ~ 23515584 (-)
XLOC_016355 si:dkey-58b18.10 coding upstream 94679 23537868 ~ 23538794 (-)
XLOC_016356 si:dkey-58b18.3 coding upstream 96996 23540185 ~ 23541059 (-)
XLOC_016357 si:dkey-58b18.2 coding upstream 99447 23542636 ~ 23546627 (-)
XLOC_016343 BX649390.1 non-coding downstream 509071 22897285 ~ 22897401 (-)
XLOC_016341 NA non-coding downstream 537752 22857105 ~ 22868720 (-)
XLOC_016340 NA non-coding downstream 554767 22845662 ~ 22851705 (-)
XLOC_016369 NA non-coding upstream 583380 24026569 ~ 24069434 (-)
XLOC_016370 CR788285.1 non-coding upstream 632824 24076013 ~ 24105475 (-)
XLOC_016372 dre-mir-736 non-coding upstream 818028 24261217 ~ 24261296 (-)
XLOC_016374 NA non-coding upstream 867446 24310635 ~ 24317436 (-)
XLOC_016381 BX530024.2 non-coding upstream 1062786 24505975 ~ 24506090 (-)

Expression


Co-expression Network