RNA id: TCONS_00032209


Basic Information

Item Value
RNA id TCONS_00032209
length 789
RNA type mRNA
GC content 0.48
exon number 3
gene id XLOC_016351
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23406472 ~ 23443189 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACTCACAATCCACTGTAGTGTGAAGATATACGAAGACTTTCTTCGTCTTTACTGACAGTTATTTGTTCGTAGATTTGTGCTTTTTAAATTGGTAACTATTTactctttaaaatgtttacattactCGGAGTAATTGCTTTAGTCCTGCGGGGAAGGACAGAAAACAAACCCCACTCAGATCGAGAAGAACCCGTGGAGAAAAACTCTCCACCCACGATGACCAGTGATGGTCGAGATATTGGTGATAGGACTGAACACCTGTCATTGGAGGAACTAAGCACCAGTGGTTGTCCAGTCCATGTTGACGACCACAGTGATGTCCTCCAATCTCCCATCACTGCACCGACCCTCCAAACTCCAGACCATGCTGCAGCTCAAAGTGTTGACGACGTCCCTACAGCCTGTGCCACGTCCGACTGTAGTGAGGATGATGTCCTTCAAGCTGCAGTGCCTTTGCTAGCTGACTTGTGTGCACGTGTTCTTCAGGACACTGAGCCACAGTCATGCCAGCAGCAGGATATGGAGAAAACTGTGACTGgtCGAGATATTGATGATAGGACTGAATACCTGTTATCGGAGGAACTAAGCACCAGTGGTTGTCCAGTCCATGTTGACGACCACAGTGATGTCCTCCAATCTCCCAGCACTGAACTGACCCTCCAAACTCCAGACCATGCTGCAGCTCAAAGTGTTGACGACGTCCCTACAGCCTGTGCCACGTCCGACTGTAGTGAGGATGATGTCCTTCAAGCTGCAGTGCCATCAGTTCCTCaggagaaggagaaaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000168894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032207 lncRNA downstream 54156 23382642 ~ 23384255 (-) True XLOC_016350
TCONS_00032206 lncRNA downstream 54777 23380296 ~ 23383634 (-) False XLOC_016350
TCONS_00032201 lncRNA downstream 351087 23084639 ~ 23087324 (-) True XLOC_016347
TCONS_00033822 lncRNA downstream 411349 23025245 ~ 23027062 (-) True XLOC_016346
TCONS_00033821 lncRNA downstream 411504 23025245 ~ 23026907 (-) False XLOC_016346
TCONS_00033368 lncRNA upstream 329889 23773078 ~ 23784039 (-) True XLOC_016366
TCONS_00033824 lncRNA upstream 500706 23943895 ~ 23947003 (-) True XLOC_016368
TCONS_00033825 lncRNA upstream 583380 24026569 ~ 24029010 (-) False XLOC_016369
TCONS_00033826 lncRNA upstream 583380 24026569 ~ 24030185 (-) False XLOC_016369
TCONS_00032235 lncRNA upstream 632824 24076013 ~ 24105475 (-) True XLOC_016370
TCONS_00032208 mRNA downstream 27043 23406784 ~ 23411368 (-) True XLOC_016352
TCONS_00032205 mRNA downstream 47145 23379502 ~ 23391266 (-) False XLOC_016350
TCONS_00032204 mRNA downstream 47632 23379401 ~ 23390779 (-) False XLOC_016350
TCONS_00032203 mRNA downstream 89295 23295415 ~ 23349116 (-) True XLOC_016349
TCONS_00032202 mRNA downstream 265703 23165250 ~ 23172708 (-) True XLOC_016348
TCONS_00032210 mRNA upstream 32534 23475723 ~ 23479714 (-) True XLOC_016353
TCONS_00032211 mRNA upstream 68405 23511594 ~ 23515584 (-) True XLOC_016354
TCONS_00032212 mRNA upstream 94679 23537868 ~ 23538794 (-) True XLOC_016355
TCONS_00032213 mRNA upstream 96996 23540185 ~ 23541059 (-) True XLOC_016356
TCONS_00032214 mRNA upstream 99447 23542636 ~ 23546627 (-) True XLOC_016357
TCONS_00032199 other downstream 437041 22994021 ~ 23001370 (-) False XLOC_016345
TCONS_00032186 other downstream 541010 22897285 ~ 22897401 (-) True XLOC_016343
TCONS_00032172 other downstream 1003865 22434430 ~ 22434546 (-) True XLOC_016331
TCONS_00032140 other downstream 2680712 20757582 ~ 20757699 (-) True XLOC_016303
TCONS_00032139 other downstream 2733888 20702706 ~ 20704523 (-) True XLOC_016302
TCONS_00032238 other upstream 818028 24261217 ~ 24261296 (-) True XLOC_016372
TCONS_00032244 other upstream 835650 24278839 ~ 24280795 (-) False XLOC_016373
TCONS_00032251 other upstream 868578 24311767 ~ 24317208 (-) False XLOC_016374
TCONS_00032254 other upstream 870556 24313745 ~ 24317205 (-) False XLOC_016374
TCONS_00032255 other upstream 870574 24313763 ~ 24317224 (-) False XLOC_016374