XLOC_016376 (plvapa)


Basic Information

Item Value
gene id XLOC_016376
gene name plvapa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24365452 ~ 24369087 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032261
GTTTGTATTGGTTGAGTAGTGATGTACAACAATAGTTATTCTCAGGCCAACTTTGGCTTGGCTGCCAAGAAGATGCACAAGTCGAAAGGCAAGAGCTGTGGTTACTACATGAAGATTGTCTTCTTTTTCTCCTCGCTTATCCAGTCATTGATCATCGCAAGTCTGGTGCTCTTTTTGGTGTATGGACAACCTGAGCATACGGTCGAGGAGAAGAGACTGCAAGAGTTGGACCAAAGTGTCAGCAAGCTCACTATGGAAAATTTCATTCTCAGAGGGAAGGAAAAGAACCTCACCAAAGTTCTGAATGTCACTCTCACTGCAAAGCTAAGCAATGACAAGCTTGTGGCTGAATTACGCAAACTAGCAAACACCTCATCTATGACAATAAAGCACCTGCAAACAACAATGTGTCGATGTGACTTGCAAAGAATGGCAGCACCTCGCGCATGCCCTCCTGCATTTTGTCCAGATTCAAATGAAAACAACAAACGCTTGCAAAGCATGCTACAGCAGTCAAATGAAATATTAGAATTGATCAAAGACAACTTTACTCAAACTGTGGCCATTTTGAGATCCGAGTTAGACACCTCCAATAAAGACAAGGATGAGTTTCACTTGGACGCAATCAGACTGAGACGAGACAAGGCTTACCTTGAAGAAGAGCTCCACTTGTATGAAAAGAAGTGCAAAGAGGACTTTGTTGAATCCTTACGAGGAATCCCCAACGTCACCAAAGAATTTCTCAGAAGGATCGACGACCTCTTCTCAAAACACATTTCGTTCATGCTGACATGTGATAAACAGAGTAATCAGCTTGAAAATATTCGCGAAAACTGCAGTAGTCTTTCAAGAGAGGTCGAGAACAAGCTCCAAACATATCTGAACATAGTGGGTGACCAGTTCACAAAGATTAATGGAGAAAACGCCAAATATGTGACCCAGAACAAACGTTTGACGGAAGATGCTGAATGGTGTAACCAGAATCGCAGCGCCATGACTCGTGAACATCGCAATAGTCTTGAGCAGCTTCAGCGCAAGAACGACCAAGACAGTGAAAAACTTCTGCTGGAGAACCGAAAACTAAAAGGGGACAACGGGATGAAAGACAAACTTCTGTCTGTcaatgaaaacaaaattcaaatgcTCACAAACACCATTGACAACCTCAATACCTCGCTTGCCAGCTGTAAGCGAACTAGCCCATTCATGCCAAACCCCTTTGGATCTCCTAACATCCCAAATACTGGTCTGGGCTCAACAGGAATGAGCAAACCCAACATGCCATGGTCAGGGGCCGGCTCGAGCGGGCCAGCATATCCTGGTATTACTGGGACAGGATCAAGCTCAAGATGGGGCAGCACAGGATCAGGTGTGACAGGACCACTTAATACACCTCTAGGTGGAACAGGGACCCTCCCAAGCACAGGATTAGGTGGGCCAGGATCAAGTAGAACAGGTCCAACCCAGACAGGGACTAGTAGTTTTGGTGGAGCAGGACTAGGGCTGACAGGATTGGGTAGTGCTGGAAGTTTTCCTTCAACTGGCAATACTGGAACAGGTTCAACAGCATTTGGCAGTGCAGGATCAAGTGGAGTAGGAGTGGGAAAACCAGCAACAGGAGGTTTTGGCTCAGTGGGATCTAATCCAACGGGATTTGGCGCAACTTCTGGAGGAGCTAGAACAGCAGTGGACAGTCATCCAATAAGTCAAGCACAGATAAATCTGCATTTGAAGGAGCTGCATCGATATTCACTCCCAAACTGAGGGAGTGAACAAAGACCTGGCGAAATCCCAGGAGCGTCTGTATAAAGACTGATTTATTAACGGGTTGAAAATAGAACTCCTATATGCACTTACCACTGCAAGTCTGTATtgtgaataataattattaacatgAATAGTAATGTTATTTTGTAGGAAGAAATTGTTTGTGCCTTAATTTCATTTATGCTTGTATATATTGTGTAATATATATCttgtatataaatacatatacagttgaagtcagaattattagcccccctgaattattagccccctgtttattttttccacaatttctgttaaacggagagcagttttttttcaacacatttctaaacataatagttttaataactcatttctaataactcatttattttatctttgcttcgatgacagtaaataatattttactagatatttttcaagatatttctaaacagcttaaagtgacatttaaaggcttaactaggttaattaggttaactaggtaggttagggtaatgtAGCAAGTTATAGCTATAGTAGCaaggaataattctgacttcaactgtatatattaaatttatcACTGTAATTTACTCAGTAttttttgtaaactatttatctttgtgctttgtaaaataaaaaa

Function

symbol description
plvapa Predicted to be involved in positive regulation of cellular extravasation and regulation of vascular permeability. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in caveola. Is expressed in hypophyseal capillary. Human ortholog(s) of this gene implicated in congenital diarrhea. Orthologous to human PLVAP (plasmalemma vesicle associated protein).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-432 Predicted to be involved in positive regulation of cellular extravasation and regulation of vascular permeability. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in caveola. Is expressed in hypophyseal capillary. Human ortholog(s) of this gene implicated in congenital diarrhea. Orthologous to human PLVAP (plasmalemma vesicle associated protein).

Ensembl:

ensembl_id ENSDARG00000076972

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032261 True 2395 mRNA 0.41 5 24365452 24369087

Neighbor

gene id symbol gene type direction distance location
XLOC_016375 ano8a coding downstream 16504 24321751 ~ 24348948 (-)
XLOC_016374 NA coding downstream 48016 24310635 ~ 24317436 (-)
XLOC_016373 myh7l coding downstream 75726 24274293 ~ 24289726 (-)
XLOC_016371 myh7 coding downstream 95390 24252987 ~ 24270062 (-)
XLOC_016372 dre-mir-736 coding downstream 104156 24261217 ~ 24261296 (-)
XLOC_016377 zgc:154006 coding upstream 17366 24386453 ~ 24407933 (-)
XLOC_016378 kcnn1a coding upstream 41407 24410494 ~ 24462277 (-)
XLOC_016379 insl3 coding upstream 118233 24487320 ~ 24488652 (-)
XLOC_016380 si:rp71-39b20.4 coding upstream 126717 24495804 ~ 24505185 (-)
XLOC_016381 BX530024.2 coding upstream 136888 24505975 ~ 24506090 (-)
XLOC_016370 CR788285.1 non-coding downstream 259977 24076013 ~ 24105475 (-)
XLOC_016369 NA non-coding downstream 296018 24026569 ~ 24069434 (-)
XLOC_016351 NA non-coding downstream 922263 23406472 ~ 23443189 (-)
XLOC_016382 NA non-coding upstream 159037 24528124 ~ 24536126 (-)
XLOC_016383 NA non-coding upstream 176393 24545480 ~ 24545941 (-)
XLOC_016385 NA non-coding upstream 185930 24555017 ~ 24565293 (-)
XLOC_016386 NA non-coding upstream 199802 24568889 ~ 24572694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07670856_07673369 NA coding CI01000004 null 7670512 ~ 7673952 (-)