XLOC_016666 (hbl4)


Basic Information

Item Value
gene id XLOC_016666
gene name hbl4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37879812 ~ 37883256 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032719
TTTAGGGGTCAAAAACTCCGTGTGAACGGAAGAAGTAACCGTAGCAAAAAAAAAGCGTTTTAAAACTagaacgtattagtgtaaacgaggccgCAGTCGGAGTAAGAGTCTATACTGTTCACATTTATCACTTGGCGTGATCTGTTGTgagcagcagatggcgctgttaAAGCATCAGCTCTGTGCTGTACTTCTCATGATGGAGTCTGGGCTTATATTATCCGCGTCTGAGAGTAGTTGTCCATCTTATGCTGGTGTTCCTGGCATACCTGGAAACAATGGCAGCCCTGGCAGAGATGGAAGAGATGGGTTTCCTGGACCAAAAGGAGAAAAGGGAGATCTAGGAATTGGTGCACAGGGACCCCCAGGAAAAATAGGACCACCAGGAGCTCCTGGACACAAAGGGGACAGAGGAAGTCCAGGTTTATCAGGGACTGATGTTCAAAATACATTAGTAACACAGCTTCGATCTGACGTCAAACACCTTACAGACAGACTCACTGTAATAGATAAAGtccTTGGATTTCGCATGTTCAAGAAAGTGGGACAGAAGTATTATGTGTCTGATGGCCTGGTAGGAAATTTTGAAACGGCACAGAAGTTCTGCTCTGATGCCGGGGCTAAAATTGTCCTGCCAAGAAGTGAGGATGAGAATAAAGTGCTGATTTCATTGCAAGAGGCCCTCGAGTCTACTTATGTACATGTTGGTGCAACAGATGCAAAGAAAGAGGGGCATTTTGTAGATTTGAGCGACCAGCCTCTAACTTTCACTAACTGGAAAGAAAAGGAGCCGAATGATTATAATGGGGCAGAGGATTGTACAGCTGTTTACAAAACTGGTGTGTGGAATGACATTAACTGTAATTCAAAGTGGCATGTGGTGTGTGAACTGTGAAACAGATTATGTTATTGTTACGATGAATAAATAACAAGTGATTCAAAGGAAACtcacaattaataaaatattaggtTTCTGTTATAGTGACATCACAAAGGTTGTTGCTTGcttttttaagtgtttaagttTTGCTTAGAAATGTAATATAATTGTTCAAAGTGAACTGTGTGTTTAATTTTGAAGatgcaatgaaaataaatattgagtTACTTAA

Function

symbol description
hbl4 Predicted to be part of collagen trimer. Predicted to be active in extracellular space; multivesicular body; and rough endoplasmic reticulum.

GO:

id name namespace
GO:0005771 multivesicular body cellular_component
GO:0005791 rough endoplasmic reticulum cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-287 Predicted to be part of collagen trimer. Predicted to be active in extracellular space; multivesicular body; and rough endoplasmic reticulum.

Ensembl:

ensembl_id ENSDARG00000054202

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032719 True 1112 mRNA 0.41 5 37879812 37883256

Neighbor

gene id symbol gene type direction distance location
XLOC_016665 zgc:66427 coding downstream 5165 37866880 ~ 37874647 (-)
XLOC_016664 si:ch211-284o19.8 coding downstream 15147 37851124 ~ 37864665 (-)
XLOC_016663 mettl17 coding downstream 42340 37827567 ~ 37837472 (-)
XLOC_016662 NA coding downstream 64439 37813663 ~ 37815373 (-)
XLOC_016661 nfatc4 coding downstream 76198 37775655 ~ 37803614 (-)
XLOC_016667 mbl2 coding upstream 4021 37887277 ~ 37889152 (-)
XLOC_016668 hbl2 coding upstream 9350 37892606 ~ 37893910 (-)
XLOC_016669 zmp:0000000729 coding upstream 11593 37894849 ~ 37896965 (-)
XLOC_016670 cbln10 coding upstream 70315 37953571 ~ 37956768 (-)
XLOC_016671 cbln14 coding upstream 75784 37959040 ~ 37960688 (-)
XLOC_016652 NA non-coding downstream 463347 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 470655 37405351 ~ 37409157 (-)
XLOC_016646 NA non-coding downstream 706987 37171808 ~ 37172825 (-)
XLOC_016645 NA non-coding downstream 722212 37157201 ~ 37157600 (-)
XLOC_016680 NA non-coding upstream 260906 38144162 ~ 38145701 (-)
XLOC_016681 NA non-coding upstream 309703 38192959 ~ 38194479 (-)
XLOC_016694 BX248328.1 non-coding upstream 1487555 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1727065 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 1943448 39826704 ~ 39827511 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_15760841_15761919 HBL4 coding CI01000004 null 15760790 ~ 15761987 (-)