XLOC_016668 (hbl2)


Basic Information

Item Value
gene id XLOC_016668
gene name hbl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37892606 ~ 37893910 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032723
cagatggcgctgttgAAGCTGTTCCTCGGGGTTTTTCTGCTCCTTCAGCTTGTTCTGCACGTATTGGTCGGAGCTGCTGAGCCTCAAACCCTGAACTGTCCTATATATGCTGGAGTTCCTGGTGTTCCGGGACACAATGGTCTGCCTGGCAGAGACGGGAAAGACGGAAGAGATGGAGCCACTGGACCCAAAGGAGAGAAGGGAGAGCCAGGAGTGAGTGTGCAGGGACCACCTGGTAAAGCTGGACCACCTGGACTTGATGGGCCGCAGGGTGAAAGGGGTCCACCGgGGTCTCATGGAAGTGAAAGTGTTATTGAGTCCCTGAAGTCTGAGATCCAGAATCTTAAAGCCGAGATTGACACCATTGAGAAAGCTGCGAGCTTCAGCAACTTTAGGAGAGTTGGACAGAAATATTACGTCACTGATGGTATTTTGGGAAATTTTAATGATGGCATAAAATTCTGCAAGGATGCTGGTGGAACATTAGTTGTGCCAAAAACTGCTGCAGAAAACCAAGCTCTAGTCAGGGTGTCAGTATCCAGTGCTTTAAGTACTGGAAAGCCGTATATTGGAGTCACAGACAGAGAAACAGAAGGACAGTTTGTAGACATTGAGGGGAAGCAACTAACTTTTACCAACTGGGGTCCTGGTCAGCCTGATGACTACCGGGGAGGACAAGACTGTGGTGTAATAGAGGTTTCTGGCACTTGGGATGATGGAAATTGTGGTGACATACGTCCTATTATATGTGAAATAGACATGTAGTATATTTGCACAAAATGAGAATGCAAATATTGACCATTAGGGTTTTTTAAACAACCTATGAGATACTATTTAGATTTAAGTGTGAAGCACGTTCTTCAGTATgtaaaatgatacatttaa

Function

symbol description
hbl2 Predicted to be part of collagen trimer. Predicted to be active in extracellular space; multivesicular body; and rough endoplasmic reticulum. Human ortholog(s) of this gene implicated in asthma; lung disease (multiple); respiratory syncytial virus infectious disease; and rhinitis. Orthologous to human SFTPA1 (surfactant protein A1); SFTPA2 (surfactant protein A2); and SFTPD (surfactant protein D).

GO:

id name namespace
GO:0005771 multivesicular body cellular_component
GO:0005791 rough endoplasmic reticulum cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-286 Predicted to be part of collagen trimer. Predicted to be active in extracellular space; multivesicular body; and rough endoplasmic reticulum. Human ortholog(s) of this gene implicated in asthma; lung disease (multiple); respiratory syncytial virus infectious disease; and rhinitis. Orthologous to human SFTPA1 (surfactant protein A1); SFTPA2 (surfactant protein A2); and SFTPD (surfactant protein D).

Ensembl:

ensembl_id ENSDARG00000094681

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032723 True 885 mRNA 0.46 3 37892606 37893910

Neighbor

gene id symbol gene type direction distance location
XLOC_016667 mbl2 coding downstream 3454 37887277 ~ 37889152 (-)
XLOC_016666 hbl4 coding downstream 9350 37879812 ~ 37883256 (-)
XLOC_016665 zgc:66427 coding downstream 17959 37866880 ~ 37874647 (-)
XLOC_016664 si:ch211-284o19.8 coding downstream 27941 37851124 ~ 37864665 (-)
XLOC_016663 mettl17 coding downstream 55134 37827567 ~ 37837472 (-)
XLOC_016669 zmp:0000000729 coding upstream 939 37894849 ~ 37896965 (-)
XLOC_016670 cbln10 coding upstream 59661 37953571 ~ 37956768 (-)
XLOC_016671 cbln14 coding upstream 65130 37959040 ~ 37960688 (-)
XLOC_016672 cbln9 coding upstream 69356 37963266 ~ 37967368 (-)
XLOC_016673 pcp4l1 coding upstream 101266 37995176 ~ 38000276 (-)
XLOC_016662 NA non-coding downstream 77233 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 476141 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 483449 37405351 ~ 37409157 (-)
XLOC_016646 NA non-coding downstream 719781 37171808 ~ 37172825 (-)
XLOC_016645 NA non-coding downstream 735006 37157201 ~ 37157600 (-)
XLOC_016680 NA non-coding upstream 250252 38144162 ~ 38145701 (-)
XLOC_016681 NA non-coding upstream 299049 38192959 ~ 38194479 (-)
XLOC_016694 BX248328.1 non-coding upstream 1476901 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1716411 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 1932794 39826704 ~ 39827511 (-)

Expression


Co-expression Network