XLOC_016669 (zmp:0000000729)


Basic Information

Item Value
gene id XLOC_016669
gene name zmp:0000000729
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37894849 ~ 37896965 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032724
GTCACGTCGGAAATTTTAGTTTTGTAGTATTTGTACGTTCACTAAAGGAGCGACTCTCCATTGAAGCAcagatggcgctgttgAAGCTGTTCCTCGGGGCTCTTCTGCTCCTTCAGCTTGTTCTGCAGCTCCTAGCCGGAGCTGCTGACCCTCAAACCTTGAACTGTCCTGCTTATGCTGGAGTTCCAGGCACTCCTGGACACAATGGTCTGCCTGGCAGAGACGGCAGAGACGGAAGAGATGGAGTCACTGGACCCAAAGGAGAGAAGGGAGAGCCAGGAGTGAGTGTGCAGGGACCTCCTGGTAAAGCTGGACCACCTGGACCTGATGGAGCCCAGGGTGAAAGCGGTCCACCAGGGTCTCCTGGAAGTGAAAGTGTTATTGAGTCCCTGAAGTCTGAGATCCAGAATCTTAAAGCCAAGATTGACACAATTGAGAAAGCTGCGAGTTTCAGCAACTTCAGGAAAGTTGGACAGAAATATTACGTCACTGATCGTATTTTTGGAACGTTCGATAATGGCATAAAACTCTGCGAGAGCTCTAGTGGAACATTGGTTGTGCCAAAAAGTTCTGCAGAAAATCAAGCTTTAGTCAGGGTGGCAGCATCGAGTGGTTTAATTAATGAGAAGCCATATATTGGAGTCACAGACAAAGAAACAGAAGGACAGTTTGTAGACATTGAGGGGAAGCAACTAACATTTACCAAATGGGGACCAGGTCAGCCTGATGATTATCAGGGAGCACAAGACTGTGGTGTAATAGATGTTTCTGGCACTTGGGATGATGGAAATTGTGGTGACATACGTCCTATTATATGTGAAATAGACATCAAGTAGTAACTCTACCATATTTGCATGAAATGAGAATGCAGAAATTCCGTATTAAGGTTTTTTAAACAACCTATATGCTTTACAAATAGTTTATATTTGAGTGTGAAGCATTCTTCAGAATgtaaaatgatacatttaatatacataacaaaaaataaatgcaccGAATGTTATGCAAAC
>TCONS_00032725
atggcgctgttgAAGCTGTTCCTCGGGGCTCTTCTGCTCCTTCAGCTTGTTCTGCAGCTCCTAGCCGGAGCTGCTGACCCTCAAACCTTGAACTGTCCTGCTTATGCTGGAGTTCCAGGCACTCCTGGACACAATGGTCTGCCTGGCAGAGACGGCAGAGACGGAAGAGATGGAGTCACTGGACCCAAAGGAGAGAAGGGAGAGCCAGGAGTGAGTGTGCAGGGACCTCCTGGTAAAGCTGGACCACCTGGACCTGATGGAGCCCAGGGTGAAAGCGGTCCACCAGGTATT

Function

symbol description
zmp:0000000729 Predicted to be part of collagen trimer. Predicted to be active in extracellular space; multivesicular body; and rough endoplasmic reticulum.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000068221

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032724 False 1010 mRNA 0.44 4 37894849 37896965
TCONS_00032725 True 291 mRNA 0.58 2 37896263 37896646

Neighbor

gene id symbol gene type direction distance location
XLOC_016668 hbl2 coding downstream 939 37892606 ~ 37893910 (-)
XLOC_016667 mbl2 coding downstream 5697 37887277 ~ 37889152 (-)
XLOC_016666 hbl4 coding downstream 11593 37879812 ~ 37883256 (-)
XLOC_016665 zgc:66427 coding downstream 20202 37866880 ~ 37874647 (-)
XLOC_016664 si:ch211-284o19.8 coding downstream 30184 37851124 ~ 37864665 (-)
XLOC_016670 cbln10 coding upstream 56606 37953571 ~ 37956768 (-)
XLOC_016671 cbln14 coding upstream 62075 37959040 ~ 37960688 (-)
XLOC_016672 cbln9 coding upstream 66301 37963266 ~ 37967368 (-)
XLOC_016673 pcp4l1 coding upstream 98211 37995176 ~ 38000276 (-)
XLOC_016674 cbln5 coding upstream 137360 38034325 ~ 38035235 (-)
XLOC_016662 NA non-coding downstream 79476 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 478384 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 485692 37405351 ~ 37409157 (-)
XLOC_016646 NA non-coding downstream 722024 37171808 ~ 37172825 (-)
XLOC_016645 NA non-coding downstream 737249 37157201 ~ 37157600 (-)
XLOC_016680 NA non-coding upstream 247197 38144162 ~ 38145701 (-)
XLOC_016681 NA non-coding upstream 295994 38192959 ~ 38194479 (-)
XLOC_016694 BX248328.1 non-coding upstream 1473846 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1713356 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 1929739 39826704 ~ 39827511 (-)

Expression


Co-expression Network