XLOC_016675 (tox4a)


Basic Information

Item Value
gene id XLOC_016675
gene name tox4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38068069 ~ 38080075 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032731
ATGGATCTGAATTTTTACACGGAACTCTCTGACGGGACCGGTCAACATGTTGATTCCGAGTTTATGGACAACTCGTCCTACAATGGATATGATTCAGTAAACAAGTTTGCAGGTGGCAGTGATTCATACCTGACCACCAGTGGACCTGGTCATCATTTTCTTGAGaaAACATTCTATACACCCTGTCTGGGTGATGAAGAGTTCGAAATCCCAATCTCCTTGGATCCAGACTCTGCTCTCACCATAGAGGATGTGGAGGCACATTTTGGAGAGCTGGCCGAACAGGCTGAGAGCTCAAGGGGTGCTGGAGTTGGAAGTGTtcttgccagtaatactgtagtTGGGGGAAATGATCCATCTTTTGCCTCCACCTTCATGAATCCCTCATCTCAGGGTATGGAGCACCTGACTTTGGGTGTGATGAACCAGCAGGGCGGAAGTGCACTGCTGAGCTCAACTCTGGGTGTGGATCTTGGCCATTCTGTTGGCTCTCATTTCGCTAGTTCCTCCTCCATGACTATTGATGTTCCAATAAACGAAATGAGCCACAGCCTCTTAGGACACAACCAGCTCACCACCATAGACCACTCAGATCTAAGTGCCCAGTTAGGGCTCAGCCTTGGTGGAGGATCTGTGTCAAAATCACCAGACCAACCGCTGTCAACCACACCGTCCCCTTCTGGATCACTGCAGGATGAAGACATGGAGGATTTTAGACAAAAAACCATGCTGGTAGACTCTTTCGCTGTCTCTGAGCCCAGTCCAGCCCAGATATCTGTTCCTCCACCTGTGGTGAGGAGGGTGGGTGGTAAGCCATCCATGGTGCCAGTGGCCACAGTGGACACAGGAGCATCACTCGGGGTCAAAAagggaaagaagaaaaaagatcCTAATGAGCCACAGAAACCAGTGTCAGCCTATGCTTTGTTCTTCAGAGACACACAGGCTGCCATTAAAGGCCAGAACCCCAATGCCACATTTGGAGAGGTGTCTAAGATAGTGGCCTCCATGTGGGACAGCCTGGGAGAGGAGCAAAAACAGGTTTACAAGAGGAAGACAGAGGCAGCTAAGAAAGACTATTTGAAAGCGTTAGCGGCCTACAGAGCAAGTCAGCTCTCGAAATCATCTTCTGAGCTTGAAGACAGCGCTCCTGCCACTCCTCCCTCTATGCCATCTCCTGCCCCCATCCACACTCCTCCTGCTGCCCCCATCCGTCCTCGGCTGACCCCCATCACTGAACAGAACACAATCACCAACATATGCGCCTCCAATATCATCCTGGACCTGCCTCAGGTCACCACTCGCTCCCGCACAGGCTCTCTACCTGTAGCCATTGGTCAAGCTCCAGCACCAAGCCCCGCCCCGACGCCCACTGTCACCAAAATCATCATCTCTAAGCAGATGCTTCAAGGAGGCGCTCAGCTCCACCAGATCCCAACATCCATGGTCACGGTGATTCCAGCTGGTGTGCGAGCCGTACAGCCTGGACGGCAGCCGCCACCTCTGCAGCAGATGCAGGGCACACCGCCTCCACCCCGCCTGCAGCAGATGGTGCAAACACAAGCCCCTCCGCCTCTTCAGGCCAAACCCCGTGGAGGAgcaggcagttctgtgggcatcACCGTTACTCCACCTCCACCTCTCCAGATAAAGATCGTGCCCGCTTCAATACACTCTGACCTGTCTACTCCGATTATTGTTACTACAGCAGCGAGCGCCACTCCTGTGATTTCCGCATCCAGCATCTCAGCCGCAGATGATCCTGCTCCCGTTGAGGTGCAAGTGGAGGAACCCAGAGAGGAGCTGCACACCGGGACAGATGAGGCTGTGACAGAGGAGCCTGAAGAGATGGAGATGGAGGTCAGCGTGGCTCCTGCTGCCTCCTCTTCAACAGCTTCTGCTAATCTGTGTGTCCGAGCCGGATGCACAAACCCAGCTGTGGAGAGTCGAGACTGGGATAAAGAATACTGCAGCAATGAATGTGTGGCCACACACTGCAGAGATGTTTTCATGGCCTGGTGTTCAATCAAGAACCAGACCTCAGCCGCTGTCAAATAAACCAAGCAAATCCCACTGATACTGGCTCTGATTGTGCCTGGACGTGTCTTTTACAAGTTAACATGACGATGTTTTACTGGAATTGCTAGTGAAGGTttagtgtttgtgttgtaaataTTGAAAGCATGAAAAGacaattg

Function

symbol description
tox4a Predicted to enable chromatin DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TOX4 (TOX high mobility group box family member 4).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0072357 PTW/PP1 phosphatase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031490 chromatin DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-576 Predicted to enable chromatin DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TOX4 (TOX high mobility group box family member 4).

Ensembl:

ensembl_id ENSDARG00000002031

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032731 True 2198 mRNA 0.52 9 38068069 38080075

Neighbor

gene id symbol gene type direction distance location
XLOC_016674 cbln5 coding downstream 32834 38034325 ~ 38035235 (-)
XLOC_016673 pcp4l1 coding downstream 67793 37995176 ~ 38000276 (-)
XLOC_016672 cbln9 coding downstream 100701 37963266 ~ 37967368 (-)
XLOC_016671 cbln14 coding downstream 107381 37959040 ~ 37960688 (-)
XLOC_016670 cbln10 coding downstream 111301 37953571 ~ 37956768 (-)
XLOC_016676 chd8 coding upstream 7338 38087413 ~ 38117538 (-)
XLOC_016677 cbln12 coding upstream 41340 38121415 ~ 38125657 (-)
XLOC_016678 trim110 coding upstream 47911 38127986 ~ 38131348 (-)
XLOC_016679 trim110 coding upstream 54849 38134924 ~ 38141997 (-)
XLOC_016680 NA coding upstream 64087 38144162 ~ 38145701 (-)
XLOC_016662 NA non-coding downstream 252696 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 651604 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 658912 37405351 ~ 37409157 (-)
XLOC_016646 NA non-coding downstream 895244 37171808 ~ 37172825 (-)
XLOC_016645 NA non-coding downstream 910469 37157201 ~ 37157600 (-)
XLOC_016681 NA non-coding upstream 112884 38192959 ~ 38194479 (-)
XLOC_016694 BX248328.1 non-coding upstream 1290736 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1530246 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 1746629 39826704 ~ 39827511 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_15956601_15962195 TOX4 coding CI01000004 null 15956000 ~ 15962930 (-)
bowfin (Amia calva) AMCG00008332 NA coding CM030123.1 CM030123.1 52626515 ~ 52649562 (-)