RNA id: TCONS_00032731


Basic Information

Item Value
RNA id TCONS_00032731
length 2198
RNA type mRNA
GC content 0.52
exon number 9
gene id XLOC_016675
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38068069 ~ 38080075 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATCTGAATTTTTACACGGAACTCTCTGACGGGACCGGTCAACATGTTGATTCCGAGTTTATGGACAACTCGTCCTACAATGGATATGATTCAGTAAACAAGTTTGCAGGTGGCAGTGATTCATACCTGACCACCAGTGGACCTGGTCATCATTTTCTTGAGaaAACATTCTATACACCCTGTCTGGGTGATGAAGAGTTCGAAATCCCAATCTCCTTGGATCCAGACTCTGCTCTCACCATAGAGGATGTGGAGGCACATTTTGGAGAGCTGGCCGAACAGGCTGAGAGCTCAAGGGGTGCTGGAGTTGGAAGTGTtcttgccagtaatactgtagtTGGGGGAAATGATCCATCTTTTGCCTCCACCTTCATGAATCCCTCATCTCAGGGTATGGAGCACCTGACTTTGGGTGTGATGAACCAGCAGGGCGGAAGTGCACTGCTGAGCTCAACTCTGGGTGTGGATCTTGGCCATTCTGTTGGCTCTCATTTCGCTAGTTCCTCCTCCATGACTATTGATGTTCCAATAAACGAAATGAGCCACAGCCTCTTAGGACACAACCAGCTCACCACCATAGACCACTCAGATCTAAGTGCCCAGTTAGGGCTCAGCCTTGGTGGAGGATCTGTGTCAAAATCACCAGACCAACCGCTGTCAACCACACCGTCCCCTTCTGGATCACTGCAGGATGAAGACATGGAGGATTTTAGACAAAAAACCATGCTGGTAGACTCTTTCGCTGTCTCTGAGCCCAGTCCAGCCCAGATATCTGTTCCTCCACCTGTGGTGAGGAGGGTGGGTGGTAAGCCATCCATGGTGCCAGTGGCCACAGTGGACACAGGAGCATCACTCGGGGTCAAAAagggaaagaagaaaaaagatcCTAATGAGCCACAGAAACCAGTGTCAGCCTATGCTTTGTTCTTCAGAGACACACAGGCTGCCATTAAAGGCCAGAACCCCAATGCCACATTTGGAGAGGTGTCTAAGATAGTGGCCTCCATGTGGGACAGCCTGGGAGAGGAGCAAAAACAGGTTTACAAGAGGAAGACAGAGGCAGCTAAGAAAGACTATTTGAAAGCGTTAGCGGCCTACAGAGCAAGTCAGCTCTCGAAATCATCTTCTGAGCTTGAAGACAGCGCTCCTGCCACTCCTCCCTCTATGCCATCTCCTGCCCCCATCCACACTCCTCCTGCTGCCCCCATCCGTCCTCGGCTGACCCCCATCACTGAACAGAACACAATCACCAACATATGCGCCTCCAATATCATCCTGGACCTGCCTCAGGTCACCACTCGCTCCCGCACAGGCTCTCTACCTGTAGCCATTGGTCAAGCTCCAGCACCAAGCCCCGCCCCGACGCCCACTGTCACCAAAATCATCATCTCTAAGCAGATGCTTCAAGGAGGCGCTCAGCTCCACCAGATCCCAACATCCATGGTCACGGTGATTCCAGCTGGTGTGCGAGCCGTACAGCCTGGACGGCAGCCGCCACCTCTGCAGCAGATGCAGGGCACACCGCCTCCACCCCGCCTGCAGCAGATGGTGCAAACACAAGCCCCTCCGCCTCTTCAGGCCAAACCCCGTGGAGGAgcaggcagttctgtgggcatcACCGTTACTCCACCTCCACCTCTCCAGATAAAGATCGTGCCCGCTTCAATACACTCTGACCTGTCTACTCCGATTATTGTTACTACAGCAGCGAGCGCCACTCCTGTGATTTCCGCATCCAGCATCTCAGCCGCAGATGATCCTGCTCCCGTTGAGGTGCAAGTGGAGGAACCCAGAGAGGAGCTGCACACCGGGACAGATGAGGCTGTGACAGAGGAGCCTGAAGAGATGGAGATGGAGGTCAGCGTGGCTCCTGCTGCCTCCTCTTCAACAGCTTCTGCTAATCTGTGTGTCCGAGCCGGATGCACAAACCCAGCTGTGGAGAGTCGAGACTGGGATAAAGAATACTGCAGCAATGAATGTGTGGCCACACACTGCAGAGATGTTTTCATGGCCTGGTGTTCAATCAAGAACCAGACCTCAGCCGCTGTCAAATAAACCAAGCAAATCCCACTGATACTGGCTCTGATTGTGCCTGGACGTGTCTTTTACAAGTTAACATGACGATGTTTTACTGGAATTGCTAGTGAAGGTttagtgtttgtgttgtaaataTTGAAAGCATGAAAAGacaattg

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0072357 PTW/PP1 phosphatase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031490 chromatin DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-576 Predicted to enable chromatin DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TOX4 (TOX high mobility group box family member 4).

Ensembl:

ensembl_id ENSDART00000056544

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033384 lncRNA downstream 252696 37813663 ~ 37815373 (-) True XLOC_016662
TCONS_00033385 lncRNA downstream 252765 37813663 ~ 37815304 (-) False XLOC_016662
TCONS_00032709 lncRNA downstream 282909 37782254 ~ 37785160 (-) False XLOC_016661
TCONS_00032707 lncRNA downstream 379757 37687463 ~ 37688312 (-) True XLOC_016660
TCONS_00032702 lncRNA downstream 490088 37569667 ~ 37577981 (-) True XLOC_016658
TCONS_00032737 lncRNA upstream 58275 38138350 ~ 38141977 (-) True XLOC_016679
TCONS_00033891 lncRNA upstream 64087 38144162 ~ 38145701 (-) True XLOC_016680
TCONS_00033892 lncRNA upstream 112884 38192959 ~ 38194479 (-) True XLOC_016681
TCONS_00032745 lncRNA upstream 136270 38216345 ~ 38225373 (-) True XLOC_016682
TCONS_00032760 lncRNA upstream 917973 38998048 ~ 38998761 (-) False XLOC_016690
TCONS_00032730 mRNA downstream 32834 38034325 ~ 38035235 (-) True XLOC_016674
TCONS_00032729 mRNA downstream 67793 37995176 ~ 38000276 (-) True XLOC_016673
TCONS_00032728 mRNA downstream 100701 37963266 ~ 37967368 (-) True XLOC_016672
TCONS_00032727 mRNA downstream 107381 37959040 ~ 37960688 (-) True XLOC_016671
TCONS_00032726 mRNA downstream 111301 37953571 ~ 37956768 (-) True XLOC_016670
TCONS_00032732 mRNA upstream 7338 38087413 ~ 38117538 (-) False XLOC_016676
TCONS_00032733 mRNA upstream 7450 38087525 ~ 38114370 (-) True XLOC_016676
TCONS_00032734 mRNA upstream 41340 38121415 ~ 38125657 (-) True XLOC_016677
TCONS_00032735 mRNA upstream 47911 38127986 ~ 38131348 (-) True XLOC_016678
TCONS_00032736 mRNA upstream 54849 38134924 ~ 38141997 (-) False XLOC_016679
TCONS_00032691 other downstream 658912 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032658 other downstream 1394150 36670656 ~ 36673919 (-) False XLOC_016631
TCONS_00032657 other downstream 1396911 36664770 ~ 36671158 (-) False XLOC_016631
TCONS_00032643 other downstream 1735738 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032642 other downstream 1739958 36327607 ~ 36328111 (-) True XLOC_016616
TCONS_00032743 other upstream 123866 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032764 other upstream 982679 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032769 other upstream 1290736 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032776 other upstream 1655477 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032777 other upstream 1846886 39926961 ~ 40026622 (-) False XLOC_016700

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_15956601_15962195.mRNA True 3271 mRNA 0.46 8 CI01000004 15956000 ~ 15962930 (-)
bowfin (Amia calva) AMCG00008332 True 1137 mRNA 0.56 6 CM030123.1 52626515 ~ 52649562 (-)