RNA id: TCONS_00032707


Basic Information

Item Value
RNA id TCONS_00032707
length 684
lncRNA type retained_intron
GC content 0.37
exon number 2
gene id XLOC_016660
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37684922 ~ 37744951 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCTTGAAATTGAAAAGAACCTACTTAAGCGGATCAAGTCTATCAAGAATGAGAAGAATATTTTGGCCTACACACTGCCTGAGTTTGACCGGGACAGCTCTGATGCTGAGAACATGGACTCTGAATCATTAGTCAGCTCTGAAAGTCTACTAGAAGATCATTTTTCGAGTTTGGGCTTGGAAGGTCAGTACTGAGGTACAGAGCATTTTGAATACAATATCCTTGGATGCCCTGCATGCTCGGTGATAGAGAGGGCTTGGATTTGCTGCAACTGCGGTGAGCTGTTTATTGTGCTTGAGTTGTGTTTTTTAACCTGCTGTGTCTATAACCATGGGTTTGCTCTGCTGCTCTTacattacatataaaaaaatgtttgcatatttatttttattacatattgtttaaatgtatttcagtgcttcctacaggtttgaaatatacttgtggcGGCAGCCAGATTGAAACgcaccttttacccacagcacataaatggtCAACTATAGACGTTAACACTTCAATATGTTCCCTCTGCTGCCGTGTTTGCTGTAGCCACTTGCatgcgacaaacaaaaaaataaaaatgtgattttaaaatattattaaatataaaaaaatatatatttttacctaTTATGGGTTACACTGATTTTTTTAAAggctgtttaaataaaaaaaagaaatcc

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0030048 actin filament-based movement biological_process
GO:0007165 signal transduction biological_process
GO:0016459 myosin complex cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000146 microfilament motor activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-938 Predicted to enable several functions, including ATP binding activity; GTPase activator activity; and actin binding activity. Predicted to act upstream of or within Rho protein signal transduction and actin filament-based movement. Predicted to be part of myosin complex. Human ortholog(s) of this gene implicated in celiac disease. Orthologous to human MYO9B (myosin IXB).

Ensembl:

ensembl_id ENSDART00000143725

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032702 lncRNA downstream 109482 37569667 ~ 37577981 (-) True XLOC_016658
TCONS_00032693 lncRNA downstream 231981 37454533 ~ 37455482 (-) True XLOC_016653
TCONS_00033890 lncRNA downstream 270998 37413404 ~ 37416465 (-) True XLOC_016652
TCONS_00032690 lncRNA downstream 315077 37370142 ~ 37372386 (-) True XLOC_016650
TCONS_00033889 lncRNA downstream 514638 37171808 ~ 37172825 (-) True XLOC_016646
TCONS_00032709 lncRNA upstream 93942 37782254 ~ 37785160 (-) False XLOC_016661
TCONS_00033385 lncRNA upstream 125351 37813663 ~ 37815304 (-) False XLOC_016662
TCONS_00033384 lncRNA upstream 125351 37813663 ~ 37815373 (-) True XLOC_016662
TCONS_00032737 lncRNA upstream 450038 38138350 ~ 38141977 (-) True XLOC_016679
TCONS_00033891 lncRNA upstream 455850 38144162 ~ 38145701 (-) True XLOC_016680
TCONS_00032703 mRNA downstream 2822 37656078 ~ 37684641 (-) True XLOC_016659
TCONS_00032701 mRNA downstream 54567 37544951 ~ 37632896 (-) False XLOC_016658
TCONS_00032698 mRNA downstream 149559 37504244 ~ 37537904 (-) False XLOC_016657
TCONS_00032699 mRNA downstream 149576 37526673 ~ 37537887 (-) False XLOC_016657
TCONS_00032700 mRNA downstream 154691 37526689 ~ 37532772 (-) True XLOC_016657
TCONS_00032708 mRNA upstream 87343 37775655 ~ 37797577 (-) False XLOC_016661
TCONS_00032710 mRNA upstream 99213 37787525 ~ 37803614 (-) True XLOC_016661
TCONS_00032711 mRNA upstream 139255 37827567 ~ 37837167 (-) False XLOC_016663
TCONS_00032712 mRNA upstream 139356 37827668 ~ 37837056 (-) False XLOC_016663
TCONS_00032713 mRNA upstream 142540 37830852 ~ 37837197 (-) False XLOC_016663
TCONS_00032691 other downstream 278306 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032658 other downstream 1013544 36670656 ~ 36673919 (-) False XLOC_016631
TCONS_00032657 other downstream 1016305 36664770 ~ 36671158 (-) False XLOC_016631
TCONS_00032643 other downstream 1355132 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032642 other downstream 1359352 36327607 ~ 36328111 (-) True XLOC_016616
TCONS_00032743 other upstream 515629 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032764 other upstream 1374442 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032769 other upstream 1682499 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032776 other upstream 2047240 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032777 other upstream 2238649 39926961 ~ 40026622 (-) False XLOC_016700

Expression Profile

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