RNA id: TCONS_00032693


Basic Information

Item Value
RNA id TCONS_00032693
length 679
lncRNA type retained_intron
GC content 0.35
exon number 3
gene id XLOC_016653
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37449294 ~ 37458527 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAAAAGTGTAAATCGCAAGAACAAAAAAGCCAGCATTATATTTATCGATTGTGACCTCAGTGACCAAAAAAGAGCTAAGAAAGGGTTTACTGTGTCTCTGAGAAACTTAAAACCGTTTGATTGTGAGGACTATGAAAAATTGGTGGATATGGCAAAAGAGAAGTATGGCAGTGCTATAACCTGGTCTGTTGAACTGATTTCAGACTACAGAATCCGCATTGGTATTTATTTAGTTTCCTCCTTTTAGAAGTGCATTTAAACatcttaaaggtgccatagagtgcattgattcagtatgttaaaatgtaaaatatttacattgtaGGTATGTGATTTGGGTAAGTTAAAACATTGTCCACAAATGATTTTATAAGCTCATTTATAACAAAAGCAATATCccccagaatgaaaacaaatcaGTTTTGATCGTATTTGCAATGGGTTTAATATTAATTAGCTTTGCTCCGCAGCTTGTGTCAGTGcctgctctctttctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacagtgtgacaTACTACATACATAGTACAAgcttaaataaatctaaaaatatggaacaaaaaatattattgttttaatctcACTAGGAAATGATGTGGCCTGTCAAATGCAGCCTtg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000147977

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033890 lncRNA downstream 38068 37413404 ~ 37416465 (-) True XLOC_016652
TCONS_00032690 lncRNA downstream 82147 37370142 ~ 37372386 (-) True XLOC_016650
TCONS_00033889 lncRNA downstream 281708 37171808 ~ 37172825 (-) True XLOC_016646
TCONS_00033888 lncRNA downstream 296933 37157201 ~ 37157600 (-) True XLOC_016645
TCONS_00033887 lncRNA downstream 298742 37153759 ~ 37155791 (-) True XLOC_016644
TCONS_00032702 lncRNA upstream 114185 37569667 ~ 37577981 (-) True XLOC_016658
TCONS_00032707 lncRNA upstream 231981 37687463 ~ 37688312 (-) True XLOC_016660
TCONS_00032709 lncRNA upstream 326772 37782254 ~ 37785160 (-) False XLOC_016661
TCONS_00033385 lncRNA upstream 358181 37813663 ~ 37815304 (-) False XLOC_016662
TCONS_00033384 lncRNA upstream 358181 37813663 ~ 37815373 (-) True XLOC_016662
TCONS_00032689 mRNA downstream 52933 37365551 ~ 37401600 (-) False XLOC_016650
TCONS_00032685 mRNA downstream 101435 37307326 ~ 37353098 (-) False XLOC_016649
TCONS_00032694 mRNA upstream 5158 37460640 ~ 37462462 (-) True XLOC_016654
TCONS_00032695 mRNA upstream 7934 37463416 ~ 37465517 (-) True XLOC_016655
TCONS_00032696 mRNA upstream 14094 37469576 ~ 37478418 (-) False XLOC_016656
TCONS_00032697 mRNA upstream 14132 37469614 ~ 37477654 (-) True XLOC_016656
TCONS_00032698 mRNA upstream 48762 37504244 ~ 37537904 (-) False XLOC_016657
TCONS_00032691 other downstream 45376 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032658 other downstream 780614 36670656 ~ 36673919 (-) False XLOC_016631
TCONS_00032657 other downstream 783375 36664770 ~ 36671158 (-) False XLOC_016631
TCONS_00032643 other downstream 1122202 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032642 other downstream 1126422 36327607 ~ 36328111 (-) True XLOC_016616
TCONS_00032743 other upstream 748459 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032764 other upstream 1607272 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032769 other upstream 1915329 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032776 other upstream 2280070 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032777 other upstream 2471479 39926961 ~ 40026622 (-) False XLOC_016700

Expression Profile

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