XLOC_017107 (CABZ01067980.1)


Basic Information

Item Value
gene id XLOC_017107
gene name CABZ01067980.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 4304457 ~ 4307735 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034134
ATGGGCAATTCAGATAGTCAGTACAGCAGTTTCATTCTCCCTGGTAAGGGAAAGTCTAGCTCCCTGAAGCTGCACAATCCCAAAGAGGACGTGGTCTCGCCACAATCTTGGTGGAGGAACTCTGACAGCACCTCTGGGTACAAGGCTAAAAATGGCTTTTCACCACACAAAAACCATCAACCGTACATGTCACGTCGATATGACTGCATTAAGGAGGGATCTAGTGACAAAATATGTGCGGAGAGCCACCAGGACTATGACAACATTTTATTCCAGGGAAATGGATTTTTTGTAGGCTACAGACAACAGAGCGGAGGCCTCCAGGCTCCTATGAGGAACCCCAGTTCTGAGTGTAAAGACAGTAAGAGCAGTCCAAAAGTTCTGCTTCGTGATGATGGAAGTCTAAGAGTAGAGTTCACTAATGCACGGAGGGAGCCAGACGTTGAGCTGTCCTTGGGAACTCGTCGAAGTGGACCTGTTGATGGCCAAAGGGCCAGTAATGGAAGCTCTCTTGGCTCCGAGGGCTCATGGTATGACTCGCCCTGGGGGAATGGGACAGATCTGTGTGACAATGTCTTCTCCAACAGCCAACCTTCGGATAACAGCAGTGGATACACCACACTCTCATCCACACGTACAGTGGACTTTGGATATTTTAATGGTTACAACACAGAACAGTCTGAGCATCATACGAGTAGCCTTACCTGCCAAACAACAGTTCATGGCGGTCAGTATGCAAACAGTGATAGCAATAGTAATGGCAACCGTGTTGAGGAGGACAGTGGTATTGGAGACTCTGTGCTCCTTCATTTGGAAAACAATGGATTACCTGAGCAATACACAAACCCAAACATGACTCTACCGTTCCCAACTGTGGGCATCCTAATGACAGATCAGTTCAAGGATAGTCCTCATCTACAAGCTTCACTGACCTCTTCCCTGGATGCAAACTCCCAAGATGAGAATCAGGAAACCCGGCTTTACACCTCGCAAACCCTGCCATGCAGAAAAGCAGTTCCTGATGGGAACACAAGGAAGGACTCGCTCAAGAGTCGCATCCGCCGTCTCAGTGATTGGACGGGAAGTCTGAGCAGGAAAAAGCGAAGGCTACAGGATCCTCAGGAACCAAGCATAGAAGTTGTTAACTGTGGAGCTGAGGGCACGGTCGAAGAATCCAGACCATTTTGGAATCCCATGTCATGCCAAACACAGCTGGACAGCACCTTATCTGGCCCTTTTGGGCAGCAGAACCAAGGTGCAACTCTCAGGCAGAACATCTATGAGAATTTTATGCAGGGCCTGGAGACCGCCAGCAGCACCGGGACCGTTGATGGACTCCAGATCTGGGAGGCTGAAGGGGAGAGCAGCAGTGGCTCGATGGGCTCCATAGAGCAAATGGACTTCCTGTTTGAGAAGGAGCAAGGTGTCGTGCGGAGGGCTGGTTGGTTGGCTTTTAAGCCTCTTATTACACTACATAAGGACCGCAAACTGGAACTGGTAACAAGACGCAAGTGGAGGCAGTATTGGGTCACGCTTAAAGGCTGTACACTTTTGTTGGGGGAATCCAATGGAAAGACCTCCCCAGAGCAGGAATGCACACCACGTTACGCAGTGCTTGCCGAGGACAGTATTGTACAGGCCGTTCCTGAGCATCCTAAGAAAGAGAATGTCTTCTGCCTCAGCAATGCCTATGGAGATGTCTACCTCTTCCAGGTTGGTGGCCTTTCTTTTGTAACATAGAACCATTTCCACATTAAGGTGCACTTTCAGTCAGTGTTTTTCAAGACGTCAATCAAAACCAATCGATTTTCACTGTTGTTGAGCAAAGTGAACCAAGCAGAAAATCACCGCTGCCATTAGATGGTGCTTAATGAACTTTAATGCCATGcataaggctgctttcacacctttaGTACGTTTCCTTTGGTCCGTAC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0002065 columnar/cuboidal epithelial cell differentiation biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0042559 pteridine-containing compound biosynthetic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0034312 diol biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0046146 tetrahydrobiopterin metabolic process biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0007409 axonogenesis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042668 auditory receptor cell fate determination biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0005112 Notch binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034134 True 1934 lncRNA 0.49 3 4304457 4307735

Neighbor

gene id symbol gene type direction distance location
XLOC_017106 ipcef1 coding upstream 53695 4221978 ~ 4250762 (+)
XLOC_017105 gnpat coding upstream 117913 4157815 ~ 4186544 (+)
XLOC_017104 TRIM67 coding upstream 172358 4060839 ~ 4132099 (+)
XLOC_017103 exoc8 coding upstream 250412 4051752 ~ 4054045 (+)
XLOC_017102 arv1 coding upstream 292463 3997684 ~ 4011994 (+)
XLOC_017108 CABZ01067979.1 coding downstream 1786 4309521 ~ 4318473 (+)
XLOC_017109 tiam2b coding downstream 26273 4334008 ~ 4345107 (+)
XLOC_017110 im:7142702 coding downstream 84952 4392687 ~ 4454794 (+)
XLOC_017111 lgals8a coding downstream 485781 4793516 ~ 4814098 (+)
XLOC_017112 tmem242 coding downstream 577563 4885298 ~ 4896355 (+)
XLOC_017099 LO018608.1 non-coding upstream 887876 3403647 ~ 3416581 (+)
XLOC_017097 NA non-coding upstream 988820 3312662 ~ 3315637 (+)
XLOC_017093 CABZ01027815.1 non-coding upstream 1395792 2908551 ~ 2908665 (+)
XLOC_017088 NA non-coding upstream 1796362 2506900 ~ 2508095 (+)
XLOC_017087 NA non-coding upstream 1822642 2480910 ~ 2481815 (+)
XLOC_017113 BX649499.2 non-coding downstream 743454 5051189 ~ 5057952 (+)
XLOC_017116 dre-mir-7146 non-coding downstream 767189 5074924 ~ 5075054 (+)
XLOC_017119 CU571247.1 non-coding downstream 1116227 5423962 ~ 5424096 (+)
XLOC_017124 NA non-coding downstream 1905075 6212810 ~ 6214789 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_07081085_07109551 TIAM2 coding CI01000051 null 7081085 ~ 7109606 (+)