G29378 (LOC106573754)


Basic Information

Item Value
gene id G29378
gene name LOC106573754
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28749977 ~ 28763663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU33620
CCGCTCCTGTTCACATTGCAATCATAATTAGCAGAAGTACCTTTTATTATCTTTATTCATTTTGTTAAATGTAGAGTTTAGGGATTGAGCCGAAGGCAACGTCAGTCTGTAGGGAAGAGTGTCGACAGGGGTCATGAGGGAGAGCTGGTTTGTGCTTCACAGTGCACATTCATTCAAAACTCATAAAGGGAATGCCCGGCACATGCACCTGGTTACAGTCGTCAGGCAGCTGGAGGTGGGTGTGATCTGGGGATGGGCAGATAGGGTCATGAAGGTCAAAAAACAGACAGCAATGGTTGTCAGGGTTCACAGCATGGGCTCCCTGCAGAGCACAATCTCCAGCTCGGAGCGGTACAGCTTGCCCCCGTCCGACAGGGCCATGATGCTCTTCTTGTAGCCAGTCAGGTTTTTGGTGTCCACCTCCTTTTTGTTCTTTTCATAGAGGTCGCGCAACAGAGCATCGAGCTCCTGCTCATCAATGTAGCCGTTTCCATCCTTGTCGTAGAATGTGAAGATAGCACTGAACTGCTCAGAGGTCAGCTTGATATCCTGGAATTTCAGTAAGAAATTTTCCTGAACTGGGAGAAGCCTCGCCATTTCAGACAGGCCCAGCTTCCCATCTCCGTTTAGATCAAACATCttgagTATTGTCTGTGTGTACTCTTGAAGCTTCTGGTCATCGTAGTGTCTGTTGGCTTTCTTCAGCAGGTCTGAGAGGAATCCCTTCAGTTCATTAGCTTCAATGTACCCACTGCGATCTGTATCGTATCGTCGCCATGCTGCCATGAATTCAGAACTAGATCCCACAAACTCTCTGAAGCAAAGCAGGAAGTTTTCCTCTGTGGGCAAAATCTGAGCTAgCTCAGACATCTCAATTCTCCCATCTGCATTCTTGTCAAACTTTTGCATGAACTCCTTCATCTTCTCTTTGAAAGTGGAGTTTGATGGGTCCACTCCGGCCCCTTTCCTTGAAATCTCCAACTCCCTGAAGAAGTTCTCCAGTTCCTTGCCCTCGATATAGCCATTGCCATCGGTATCGAAATGGTTCCAGATGTCGATGAACTGGGTGGCGCTCAATTCCGCCAGATGAAGGTGTGGAGGCTGCTGTAGTTTGTTTGCCATCTTCCCAACAACTTTTCCTCCTGTGAGCTAGAATATCCCGTGC

Function

NR:

description
calretinin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33620 True 1165 lncRNA 0.48 11 28749977 28763663

Neighbor

gene id symbol gene type direction distance location
hydin hydin coding downstream 12669 28663539 ~ 28737308 (-)
necab2 LOC106573751 coding downstream 88524 28535157 ~ 28661453 (-)
ranbp10 LOC106560827 coding downstream 411454 28294448 ~ 28338523 (-)
ripor1 fam65a coding downstream 529148 28106386 ~ 28220829 (-)
ctcf ctcf coding downstream 643960 28098876 ~ 28106017 (-)
LOC110520584 LOC106573758 coding upstream 30503 28794166 ~ 28830947 (-)
LOC110520608 LOC106573759 coding upstream 71615 28835278 ~ 28842650 (-)
LOC110532163 NA coding upstream 99318 28862981 ~ 28882631 (-)
LOC118946030 NA coding upstream 608270 29371933 ~ 29380725 (-)
nr2f2 LOC106573769 coding upstream 899285 29662948 ~ 29672991 (-)
G29384 NA non-coding downstream 471 28748312 ~ 28749506 (-)
G29369 NA non-coding downstream 18245 28727410 ~ 28731732 (-)
G29365 NA non-coding downstream 31484 28718242 ~ 28718493 (-)
G29359 NA non-coding downstream 38712 28711005 ~ 28711265 (-)
G29349 NA non-coding downstream 55653 28693916 ~ 28694324 (-)
G29381 NA non-coding upstream 635 28764298 ~ 28765543 (-)
G29380 NA non-coding upstream 1985 28765648 ~ 28766980 (-)
G29395 NA non-coding upstream 67606 28831269 ~ 28831491 (-)
G29376 NA non-coding upstream 69906 28833569 ~ 28834943 (-)
G29409 NA non-coding upstream 98594 28862257 ~ 28862761 (-)
G29355 NA other downstream 45621 28703887 ~ 28704356 (-)
G28870 NA other downstream 683672 28057443 ~ 28066305 (-)
LOC110520292 gnao1 other downstream 1106857 27631001 ~ 27781768 (-)
G25117 zfpm1 other downstream 3467959 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 3468947 25280592 ~ 25281030 (-)
G29906 mef2a other upstream 516613 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 2368230 31131151 ~ 31132900 (-)
LOC110521048 LOC100194695 other upstream 2662460 31426123 ~ 31444964 (-)
G33386 NA other upstream 3221108 31984771 ~ 31989249 (-)
G35075 LOC106573452 other upstream 4343456 33107119 ~ 33108497 (-)

Expression


Co-expression Network