XLOC_020123


Basic Information

Item Value
gene id XLOC_020123
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6570980 ~ 6704548 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041869
TAGCTTGATTAAAACGTTATCTGTCTCTACAACAGTTTTGTCAAGCAGGAAGTCCAACTGTAAGCTTCATAAAAGGAGGACAGGAAGAagctgttcatctgcaaagacgCGTTGCCATGTTAACAACAAAAATCGTGTCCATCTAGCAGAGCAAACCTCTGAAAGAAAGAGCTTGTCTGGAAACCAGGTCACAGGTTTCAGTTTGACTCAGAAGATGAGCTGTTAATAACATAAGGTAATGTGAGATGACAGACTGTTTGAACTTTGTGTTGTGCTGAACAAAATAATTGATAAATAGATAACTAAGTTGATTTATAAACTCACTCtgcaaaaaacacattttacaccatgttattaaaGAGAATTCACACCGCAGTCATCTACTTTAATAGAGTCAGGAAACTGCCATTCAGAAATGATCAATGGTAAAtacttcaaaatattaaaatcactATTAAGTAAATTATGTCTTAAAAAGAGCCACAAGAATATGTAGTACAGAGACATACGTCttcagtgtttgtgtgtacttCCACAGTCAAACTCTGTCGAAGGGGAGGGGCTGCAGGGGGTTTACAAAGAAGCAGCAAACCTTTTAGACAGGACTTTTCACTGAACACCCGAAGAACATGTTTCTTTTGCTGGGTTTATGCTGGTGGCACCTAACTGGTGTGTTTAGTGAGAAGTTATCAGTCATGGAGGGAGATTCAGTCCGGCTACAAACTAAAATGACTAAGCTACACGAAGATGACAACATACTGTGGACTTATAGCAAATCTTTGATCGCTAAAATCAGCATGGAGAAGCAAATCTTCTCCACATTTGATGGTCCTGATGATAGATTCAGAGGCAGACTGAAGATGGACAAacagactggatctctgaccatcacaaacATCAGACTTGAACATGCTGGGGAATATGGAGTAAAGATAACCGGGgaaaaactgactaaaatatcatTCGGTGTTTCTGTGTATGCTCGTCTATCCAGTCCTAGCATTACTAGAGAATGCTCATCTTCATCCCAGAATAACTGTTCAGTGgtgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaagcagtgtattgtccagcatcattgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggatagaaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACCACACATCTGGACATCAACACACTCTGTCAGCCGTGTCCAGATGAGGATCTGCATCTGTTCAACATTGTGTGGATTTGTGCTGCTGTTGGGTCTCTGTTGATTTTAGTGTCTGCCGTGATGTGCTGCATCTCCAAGAAATGTAGAAAAACAGTTCATAACTGTGAGGAAGACCAATCTGATTCAACATTGTGTAAAGAAAAATCACGAAAAAAGAAATCAGACATGCAGGCTGTTTATTACAATGTCCCTAAAAGACGGTGATAGTATCTAGCCTATAGGCTTACTGGAACCAGTGTAAGAGCTCAGCTTTCATCTTTCATCAAtcctttttgtttcatttcaacgCTTACTTTCTGCACAGATAACTACTTTGTTTTGTCCTTGCATATTtggtgtaatattattattataaatttattgtaataattttgtttgtatttataagTTTAACCAACAGCACTTAGAAATGTaaccacaaaaaaaatctataaaatctaTTCTATCTAGTTTACTGTGTGTATAAATGAACATTAGCTATTAAATACTGATCACATCCTTCACTTTATT
>TCONS_00040089
GGTGTGTTTAGTGAGAAGTTATCAGTCATGGAGGGAGATTCAGTCCGGCTACAAACTAAAATGACTAAGCTACACGAAGATGACAACATACTGTGGACTTATAGCAAATCTTTGATCGCTAAAATCAGCATGGAGAAGCAAATCTTCTCCACATTTGATGGTCCTGATGATAGATTCAGAGGCAGACTGAAGATGGACAAacagactggatctctgaccatcacaaacATCAGACTTGAACATGCTGGGGAATATGGAGTAAAGATAACCGGGgaaaaactgactaaaatatcatTCGGTGTTTCTGTGTATGCTCGTCTATCCAGTCCTAGCATTACTAGAGAATGCTCATCTTCATCCCAGAATAACTGTTCAGTGgtgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaagcagtgtattgtccagcatcattgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggatagaaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACCACACATCTGGACATCAACACACTCTGTCAGCCGTGTCCAGATGAGGATCTGCATCTGTTCAACATTGTGTGGATTTGTGCTGCTGTTGGGTCTCTGTTGATTTTAGTGTCTGCCGTGATGTGCTGCATCTCCAAGAAATGTAGAAAAACAGGTTAGGtctaaaatgtttaaagaaaatattCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095782

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041869 False 1790 lncRNA 0.38 6 6570980 6704548
TCONS_00040089 True 738 processed_transcript 0.43 3 6571847 6576940

Neighbor

gene id symbol gene type direction distance location
XLOC_020122 NA coding upstream 36966 6533698 ~ 6534014 (+)
XLOC_020121 CR352226.6 coding upstream 55156 6512469 ~ 6515824 (+)
XLOC_020120 NA coding upstream 71678 6494811 ~ 6499302 (+)
XLOC_020119 si:ch211-105n15.1 coding upstream 95562 6471584 ~ 6475418 (+)
XLOC_020117 si:dkey-19a16.13 coding upstream 149822 6320862 ~ 6421158 (+)
XLOC_020127 CT583625.4 coding downstream 7001 6711549 ~ 6712197 (+)
XLOC_020128 CT583625.6 coding downstream 22718 6727266 ~ 6727914 (+)
XLOC_020129 CT583625.2 coding downstream 35491 6740039 ~ 6741422 (+)
XLOC_020130 CT583625.1 coding downstream 53193 6757741 ~ 6759019 (+)
XLOC_020131 NA coding downstream 107601 6812149 ~ 6812872 (+)
XLOC_020115 AL928685.3 non-coding upstream 280630 6290234 ~ 6290350 (+)
XLOC_020114 NA non-coding upstream 294797 6269446 ~ 6276183 (+)
XLOC_020111 NA non-coding upstream 404228 6165804 ~ 6166752 (+)
XLOC_020132 NA non-coding downstream 127225 6831773 ~ 6970044 (+)
XLOC_020135 NA non-coding downstream 165743 6870291 ~ 6873611 (+)
XLOC_020136 NA non-coding downstream 175193 6879741 ~ 6881278 (+)
XLOC_020139 CU929149.1 non-coding downstream 238855 6943403 ~ 6949524 (+)

Expression


Co-expression Network