LOC110533643 (LOC106605966)


Basic Information

Item Value
gene id LOC110533643
gene name LOC106605966
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14332751 ~ 14335014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618058.2
aacaattaaatccatttcaatcccactttgtaacacaacaaaattgtGAAAAAGTCAAGTGTTGTGAATACTTTGTGTGTAGGACAGTGTGTTAGATGAGGGAAATACGCTTTAGAATCTCATATGATCTGTACTGGAATGACTGGCAGACACGGGACAGTGTCTGAGAAACAGTGAGTCAGGTGAGGAGACAAACATAGAATCCTCCCTGCATACTCTATCCTTAACACAGCAGTCTCAGCATGGACACCCGGTCACTCTGCAGAATGGTGAATCTCCTATTGTGTTTCATGGAAGCCCTGGGCGCTGCTTCGAACGATGACGGCTGGTCTATGAAGGTTCAGGCGGAGGTGCGTGCCATGGAGGGCTATCCAGTGGTGCTGCCTTGCTCCTTCACCCACCCCCACCACACGCTGcactcctccctgcaggtggtgtGGCGGATGGGCCACGGCCAGGGCTCTACGGTGCTCTACCACTGCTCCTCTCCCACTGGGGCCAGGACCTGCCAGCCAGGCCCTCAGCAGGACCAGCGTTATCGCCTGGAAGGGAATCCCCGAGAGCACGACCTCTCCTTGCGCATCAACAGCGCCGCCCTGCAGGACAACGGACGCTACTACTGCCGTGTGGAGGTCCCCGGACACGCACATGCCAGCTACGAGGATAAGATGGGCACACGGCTTAGAGTGGAGGCTGCCCCACGAATCCTGGGCCTGTCAGTGGAGGGCAGTGAGGAAGCTGGCTACAGGGCTCAGTGTCGTGTCCAGGGCTCTCCCCTACCTGACATCCAGTGGCTGGGGCCTGACCAGCTCATGGAAGGCTCcgacatctctcccctctcccaggaGTCCCTCGAGCAACATCACACCACCAGTCAGCTCCGGGATGTCCTCCCTGGGCAGCAGTACACATGTAGTGCCTCCAACCCCCTGGGGAAGGACCAGGCCACCCTGTACATGCTGCCCCCCAGGCAGGTGCAGGTCTCTGGGGAGGCCCCTCCGCTGctgctcctgctctccctctccctggggtTCAAGGTGCTCCTGCTGCTGGGGATGGTAGTCTGGCTGCCGCAGGGAGGAGGCCCAGCATGGCTCAGATGCTGGTTCAAATGATACACTGTTTGCATACGCATACACACTAATCCAAATGTTTTAACTTCtcatacatttttccatttgtcttcaataaataatacattatggACCTATTTGCATATAATTCAATCCCACCTCATTCCCTACCAAGGGTTTATATGTAATGAATAGAGTGTAAATCATTCGTTTATTGTTTATGAATCTAACTCATTGGTTGAAATGTTGTGATGATCTAACTATTTGTCAAGCCTCAAAATGGGGGCTACACACAAAACCTCTGTCCATTTAAAGGAGAGGATGGTATATTTATTGTGGTGGTTTAAAGAATACAGCACAAGCATAGCTTGTTTTACAAATATGCCACATTTAATGTCATTTAAAGGTAATATAACGAGACGCAGCCATGTGGGGAATAGTGCTCCAGGTGTCTCGTTTCAGCAGGTttttatcttgttcttgataccttGTCTTGTTGAGGCGTTTTGACTGATTTCacatctatgctaatatggctaaaattagctatctagctaactaataactgtaacaatgtatttgagag

Function

NR:

description
sialic acid-binding Ig-like lectin 15

GO: NA

KEGG:

id description
K16352 SIGLEC15; sialic acid binding Ig-like lectin 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618058.2 True 1659 mRNA 0.50 3 14332751 14335014

Neighbor

gene id symbol gene type direction distance location
LOC110513641 NA coding downstream 41476 14290216 ~ 14291275 (-)
LOC110535417 LOC106585541 coding downstream 145490 14155666 ~ 14187261 (-)
LOC110535427 LOC106585544 coding downstream 251951 14046340 ~ 14080800 (-)
LOC110534084 LOC106574737 coding downstream 304873 13981286 ~ 14027878 (-)
LOC110535305 LOC106574784 coding downstream 372497 13957030 ~ 13960254 (-)
LOC110490474 LOC106606103 coding upstream 30715 14365729 ~ 14374923 (-)
LOC110490494 LOC106586326 coding upstream 51719 14386733 ~ 14398249 (-)
LOC110490504 LOC106574261 coding upstream 63343 14398357 ~ 14405044 (-)
LOC110516895 LOC106574265 coding upstream 69381 14404395 ~ 14406810 (-)
LOC110535605 LOC106574865 coding upstream 73977 14408991 ~ 14418164 (-)
G115561 NA non-coding downstream 8416 14324080 ~ 14324335 (-)
G115557 LOC106585523 non-coding downstream 25609 14300171 ~ 14307142 (-)
G115490 NA non-coding downstream 109057 14125402 ~ 14223694 (-)
G115484 NA non-coding downstream 188334 14109507 ~ 14144417 (-)
G115492 NA non-coding downstream 205567 14126196 ~ 14224919 (-)
G115564 NA non-coding upstream 1980 14336994 ~ 14337288 (-)
G115567 LOC106605965 non-coding upstream 5134 14340148 ~ 14340542 (-)
G115575 NA non-coding upstream 5633 14340647 ~ 14345292 (-)
G115568 NA non-coding upstream 28163 14363177 ~ 14364307 (-)
G115586 NA non-coding upstream 40079 14375093 ~ 14375324 (-)
G115431 LOC106574784 other downstream 356190 13962185 ~ 13976561 (-)
LOC118937748 LOC106574107 other downstream 671160 13650726 ~ 13661631 (-)
G114928 LOC106574568 other downstream 750145 13574535 ~ 13582606 (-)
tmem245 LOC106595499 other upstream 191054 14508116 ~ 14526558 (-)
alg2 alg2 other upstream 220245 14550685 ~ 14556207 (-)
G115601 sc61b other upstream 228789 14556423 ~ 14565399 (-)
G116014 NA other upstream 480265 14815279 ~ 14816661 (-)

Expression


Co-expression Network