LOC110516895 (LOC106574265)


Basic Information

Item Value
gene id LOC110516895
gene name LOC106574265
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14404395 ~ 14406810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962136.1
CGCAGACTAAAAACAATAGAATGTGTAAATGTTTAAACAACTTGAATGCATCTGCTTTATTATTTTCAAACGTGTGAATACTATTTACGTACCTGAATCATCCGGTGCGTCTTGCATGTCCGTGTCCCCCTCCGTCACTACTCAGGGGGGATTCCCCTATAATACCGGCAAGGGGGTTGAACTCCGGTGTCCTTTCCTCCGCCGTGGCAGAACACTTCTAGGTAATGCATGTTCAGCAGTAGTATCTGTAAACGAGAGGAAGAACCAGCACTGGAGTTGTCAGTGCCTTGTTCTCGGCAGAGTTCTCCCACACGCTCACGAACTGAGAGATGAACCTCTCTGTGGCTATTGTCGTTCTTACTGCGGTCGTCTGCACTTCGGCAGAAATTCCTCATGAGACCGTCTATGTGCAGGGCTGTCTTGAGAATACAAAGGTGGAGGCGGAGGCAGAGCTTCAGGTGGATGGGGAGGAAGTGGTATATGCTGACTTCCAGAGTGGACGGGAAGTTTGGACATTGCCTGAGTTCCTGGGGCCATTCCCAAGCTCCACTGTTCGTAACTTCTACAAGAATGCCGTTAAAGGCAGACGATTGTGTCAGGATGCCTTGGCTCTTTGGATATTAGAAGAAAAGTGTCCACCTGAGGTAAAAGatgccCCTGAGAGCACCATCTACCCCAGGGCTGAGGAGGTGCTGGGGGTGGAGAACACCCTTATCTGCTTTGCCAATCATTTCTACCCCCCGCCTGTCAAAGTCAACTGGACCAAGAATGGCCTGGAGGTGACTGAGGGAGCGTCTCTCAGTCGGTACTATCCTAATAAAGATGGAACGTTCCACCAGTTCTCCAGCCTGAGTTTCACTCCACAGGAGGGGGATGTCTATGCCTGCACTGTGGAGCACACAGCCTTGGAGGACCCCAAAACCAGGTTCTGGGAGTATAAGATACATGAGGTGAGTGGGTCCAGTGCTGGTCCTGCTGTATTCTGTGGAGTGGGCCTGACTCTGGGACTGTTGGGAGTGGCTACCGGAACATTCCTGTACGTCAAAGGACAACAGTTTAACTGAATTGTGACATATATGAAATCTAAAAAATCCTCTTTTGCAGTTGTAGGTAAACAATGTGACAGAATTAGTGGCGTACCGCAGTTGCATATTTTTTGTTGAGGGGGGAAACAGCTAATGTCGtacaattttacacattttgccatcggGCAAAGAAAAATAGGCAGTTTTATAACTAATCTCATGCTAtattgccatgaggctgagagagaatgttgctgttttaaagctaatttcctgcaattctacacacaTTGCCATGGGACAGAGAGAAATGTGCATTTTTTAAGCacatttcctgctattctacacattttgctctgaggctgagagaaaaGGTTGAAGTTTAGCAGCTAATTTCctgtcattttatttttttttgccatgGCTTATGACATGTTCATATGTTATCTGGGGAGGGGGGGCTGACCTTCAGGGCGTACCCACCTTTTCttttggagaggaggagggggtggctGACCTCCAGGGCGTACCCACCTTTTcttttggagagagaggggg

Function

NR:

description
H-2 class II histocompatibility antigen, A-Q alpha chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962136.1 True 1583 mRNA 0.48 5 14404395 14406810

Neighbor

gene id symbol gene type direction distance location
LOC110490494 LOC106586326 coding downstream 6146 14386733 ~ 14398249 (-)
LOC110490474 LOC106606103 coding downstream 29472 14365729 ~ 14374923 (-)
LOC110533643 LOC106605966 coding downstream 69381 14332751 ~ 14335014 (-)
LOC110513641 NA coding downstream 113120 14290216 ~ 14291275 (-)
LOC110535417 LOC106585541 coding downstream 217134 14155666 ~ 14187261 (-)
LOC110535605 LOC106574865 coding upstream 2181 14408991 ~ 14418164 (-)
tmem245 LOC106595499 coding upstream 101306 14508116 ~ 14526558 (-)
LOC110508190 LOC106606061 coding upstream 121251 14528061 ~ 14533240 (-)
alg2 alg2 coding upstream 143875 14550685 ~ 14556207 (-)
LOC110535698 LOC106593159 coding upstream 367503 14774313 ~ 14795026 (-)
G115590 NA non-coding downstream 23895 14380289 ~ 14380500 (-)
G115586 NA non-coding downstream 29071 14375093 ~ 14375324 (-)
G115568 NA non-coding downstream 40088 14363177 ~ 14364307 (-)
G115575 NA non-coding downstream 59103 14340647 ~ 14345292 (-)
G115612 NA non-coding upstream 13974 14420784 ~ 14421033 (-)
G115606 NA non-coding upstream 36126 14442936 ~ 14499718 (-)
G115627 NA non-coding upstream 40821 14447631 ~ 14447941 (-)
G115639 NA non-coding upstream 64012 14470822 ~ 14471376 (-)
G115492 NA other downstream 179476 14126196 ~ 14224919 (-)
LOC110535427 LOC106585544 other downstream 343437 14046340 ~ 14080800 (-)
G115431 LOC106574784 other downstream 427834 13962185 ~ 13976561 (-)
LOC118937748 LOC106574107 other downstream 742804 13650726 ~ 13661631 (-)
G114928 LOC106574568 other downstream 821789 13574535 ~ 13582606 (-)
G115601 sc61b other upstream 156993 14556423 ~ 14565399 (-)
G116014 NA other upstream 408469 14815279 ~ 14816661 (-)

Expression


Co-expression Network