G113787


Basic Information

Item Value
gene id G113787
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11489415 ~ 11490964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU130323
AGCCAGATGACTGACATTCTCTCAGAGCACACTGCTGATTTAGggtgtgtgtctatctctctctgtctctatctctctctctctctctctctctctgtctctctgtgtatgtgtgtgtgtgtctctctctctttctctctctctctctctctgtgtatgtgtgtgtaggtgtatgtgtgtgtctctctctctctttctctctctctctctctctgtgtatgtgtgtaggtgtatgtgtgtctctctctctctctgtgtgtatgtgtgtctctctctctttctctctctctctctgtgtaggtgtgtgtaggtgtatgtctctctcgttctctctctctctctctctctttctctctctttttctctctctctttctgtatgtgtgtaggtgtgtgtaggtgtatctttctctctctctctctctgtatgtgtgtaggtgtgtgtaggtgtatctctctctctctctctctctctctctcgttctgtctctctctctgtctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctgtgtctctgtatatGTCAGATTGAGAGATAAATATACCCAGATGCCCACAGCAGTAGATATCTCTATACTCTCCTATCATCTGTGTTTATTGTAGAGAGGTCTAACTATCCTATCGTCTGTGTTTACTGTAGAGAGGTCTAACTCTCCTGTCATCTGTGTTTACTGTAGAGAGGTCTAACTATCCTATTGTCTGTGTTCACTGTAGGGAGGTCTAACTCTCCTATCATCTGTGTTTACTGTAGAGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130323 True 810 lncRNA 0.40 2 11489415 11490964

Neighbor

gene id symbol gene type direction distance location
LOC110514530 LOC106572903 coding downstream 86553 11398092 ~ 11402862 (-)
prelid3a LOC106593866 coding downstream 227906 11196145 ~ 11261793 (-)
lratd2b LOC106573048 coding downstream 320777 11165113 ~ 11168638 (-)
LOC118937688 NA coding downstream 429942 11058263 ~ 11060049 (-)
LOC118937685 NA coding downstream 608025 10879856 ~ 10881390 (-)
LOC118937712 NA coding upstream 93244 11584208 ~ 11585455 (-)
LOC118937710 NA coding upstream 94595 11585559 ~ 11586577 (-)
LOC118937716 NA coding upstream 468315 11959279 ~ 11960863 (-)
LOC118937715 NA coding upstream 470590 11961554 ~ 11962594 (-)
LOC118937706 NA coding upstream 594600 12085564 ~ 12089429 (-)
G113786 NA non-coding downstream 3699 11485352 ~ 11485716 (-)
G113784 NA non-coding downstream 7151 11480929 ~ 11482264 (-)
G113785 NA non-coding downstream 7517 11481242 ~ 11481898 (-)
G113771 LOC106596421 non-coding downstream 37850 11438751 ~ 11451565 (-)
G113770 NA non-coding downstream 53753 11434578 ~ 11435662 (-)
G113789 NA non-coding upstream 1367 11492331 ~ 11492600 (-)
G113790 NA non-coding upstream 2572 11493536 ~ 11494031 (-)
G113794 NA non-coding upstream 10421 11501385 ~ 11501780 (-)
G113800 NA non-coding upstream 26145 11517109 ~ 11517653 (-)
G113806 NA non-coding upstream 45869 11536833 ~ 11539732 (-)
G113733 LOC106606124 other downstream 136674 11349342 ~ 11352741 (-)
G113720 NA other downstream 163803 11323041 ~ 11325612 (-)
G113712 NA other downstream 176757 11310843 ~ 11312658 (-)
G113688 NA other downstream 271261 11210473 ~ 11218154 (-)
G113096 NA other downstream 467681 11021041 ~ 11021734 (-)
LOC110513475 LOC106592216 other upstream 135571 11471939 ~ 12290710 (-)
G114390 NA other upstream 1093063 12584027 ~ 12585140 (-)
G114402 NA other upstream 1119705 12610669 ~ 12613680 (-)
G114424 NA other upstream 1216863 12707827 ~ 12709315 (-)
G114442 NA other upstream 1244350 12735314 ~ 12739157 (-)

Expression


Co-expression Network