XLOC_021815


Basic Information

Item Value
gene id XLOC_021815
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32577050 ~ 32579434 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044856
CATGGCATTCTcagtgggttttcttttaaacaacaaatttagccttaaatgagcataaaaagttaggaaagccaTCGATATCCCTTACTTTCACATcctaatgttgacaggtatggaaaTGACTCTTTAACTTGTCCCACGTCTTAAGAAATAGACCACAATCCTTTAAATCtccattttttttatgaaatagcTGTCATTTTTGAGTCATACTATATCAATGAGTTCATTGATTCGGTAAACACACTGGTAAGATGCTTTTGTGTCCGTTATAGCATTTAAAAGCCTTCATTGCAATCGCTTGTCAAATATTGACCAAAATATCCTTCAAAAAAATTCTCCTTTTGTGCTCCATGGAAAAGAAATTCAAGACTTGGACATACCCATGAGTGAATAATCGATCATccggatgaactattcctttaacagaTTAATTCATTGTCTTTCATGCAGCTCTTCATTAATCTCCTGCACTGGATCctatttttgatgtgttttttataTATCTCCGATCACACTGTGCACATGACTAGTTGAGATCAAAGGCGAGCTTCAAAGCAGCAGGAGGAATCTGAAGCTAAAGGGGTCTGTCTGTCTCCATCTCATTCCTATGCTCCACCAACACCACCCGTCTGAGAGAGAGATCTGATCAGTCTCCAACAGTTCACAAAGACCGGGAGAAAAATGACACGTCGCTGATTTAATCAACGAGAAACAACAGATTAAATGTTCTAAGGCCACAGGGGGGGAAAAGAAACAACCATTTCGGCCATTTGAGTCGGTATCTTCACATCCGATACTGCATTTTTACTGTTGAGAAGTTAAATCCCGAAAACCTCCGTGAACCTTAGATGACTCTGACCTGAACGACCTTGTCTAGTTGGCTTCGGATGATCTTCAAAAAACCTGCCATCATGCATTATAAATGAAAGCCGTGTTGTCTTTTGTTCATGCGTTCTGTTGACATATTTCATGTCAGGCGGGGggataataatacaaaaaaaaaaaatcccactcAAGCTATCAAGATCTAAAGTATTTTACAAATACTTTATATTTACAAACTCCGTTCTAAAGGTCTTTTCGTACCTGAATTTGAAAGTTGAGTGAGTGAACTTCTAAACCGGAGATTCTTTTGTTATTGTACAGTATACAGGGTCCGTTCCCTTAATAAAGCATCAACCGACAAGTGCGTAAGTAAGTGATCTTTTGGCACTTAATCCCGACGGATGTGTACAGAAAGGAAGTGACATGGTATATTACATCATCATAGGCGTTCCTCTGAGTCATCCACAACTCACATGACCTCTTGGCACTTGAACAACAGGAGTAAATGGGAAaggagatattattattattctttttttctataTGAGGTACTGTATAATGCATGCAGACTACACACACATTGGACCATacataataattaatactttCCGGTAAGATGATCTCAAGCGAGTCTCGTTTGACAGGGTTTTTCCTCCATGTTTGAGCTGAAGGTGCAACTCGTCGCCGCTTTCCTTACTAAATCTCAGCAGCGCTACTATGGAGGGAGGTTCAGTTCTGTAGGACGTCGTGCCGCGGAGATCAGCTCAACTGACCCCCGTTTGTTTTTTAGAAAAGCAACAAAAAATGCGAAGACAAAATAGAGTAACGTTTGTACATTCACATACGCTTACATGTAGAAAACAGGACATATGCACATAGAGAGCCGAGTTGGTCCAGTTCCAAACTGGTCTGTGGTCCTTCGCTGTCGTTTCAAGATAGTTTGGGACATGCTGGTTAAACTTTGGGCCCCATTTTGCGTTCATCACCTAAGATGCTTTGCTGTCTCTCAGGTTGGAGGGATTACTAGAGTGTGGACATGCACACGCGCGTGTGGGTAGCTTTCCAAGGACAAGAAGCCACTCGAGCTTTCGCCACACCAAAGATGAGGAGTTACGCTAGCCGACTCAACAGAAAGAActcatgtataaaaataaaatttggaAGTAAAAGCCATCAACTGGACGGTAATGGCGAGGCAGTAGATGTCTGTTTCCTTCTGTCGAATCCTCCTGAAATGGTTTTAGCAAGCACATTTTTGTTGAGGAAGTATCGGGGTCTCGTCAGATCCTGAAATCGAGTCTTGCATCCATCACGCTAATCAGATAgatgaactaaaaacaaaacaaaatgcctCAGGAAGCTGCTCGTCCCGcaatgtttatcttttttttccccttaaaaagaaacaactaaaaaactGAAGTTTCCAGTCTTGATCCCATCATTAAGACGAAAGCCATGTGAAGACTTGCTTTCATCAAATAGTGACCGCTTCACAGAATCGAAAAAAAGCACAAGCTATTGTTGGTGTGGTGTCTCTAGCAAGTGTTGCTCTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044856 True 2385 lncRNA 0.41 1 32577050 32579434

Neighbor

gene id symbol gene type direction distance location
XLOC_021814 NA coding upstream 14236 32562610 ~ 32562814 (+)
XLOC_021813 si:dkey-261h17.1 coding upstream 44438 32499916 ~ 32532612 (+)
XLOC_021812 NA coding upstream 89324 32480330 ~ 32487726 (+)
XLOC_021811 si:ch211-66i15.5 coding upstream 142117 32426954 ~ 32434933 (+)
XLOC_021809 taf8 coding upstream 153702 32392461 ~ 32423348 (+)
XLOC_021816 AL928610.1 coding downstream 539576 33119010 ~ 33119124 (+)
XLOC_021817 dre-mir-205 coding downstream 710839 33290273 ~ 33290361 (+)
XLOC_021818 si:ch211-226m16.3 coding downstream 715199 33294633 ~ 33309622 (+)
XLOC_021819 rapgef3 coding downstream 801720 33381154 ~ 33444055 (+)
XLOC_021820 NA coding downstream 876129 33455563 ~ 33459265 (+)
XLOC_021807 NA non-coding upstream 323973 32250356 ~ 32253077 (+)
XLOC_021806 NA non-coding upstream 363690 32210258 ~ 32213360 (+)
XLOC_021805 CU041363.1 non-coding upstream 375556 32194408 ~ 32201494 (+)
XLOC_021821 CT027694.1 non-coding downstream 958617 33538051 ~ 33538169 (+)
XLOC_021824 CR354542.1 non-coding downstream 1180313 33759747 ~ 33760665 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G15533 NA non-coding CI01000001 null 4270132 ~ 4317068 (-)
tiger barb (Puntius tetrazona) G158489 NA non-coding NC_056721.1 CM032090.1 16832106 ~ 16836166 (+)