LOC110523381 (LOC106568667)


Basic Information

Item Value
gene id LOC110523381
gene name LOC106568667
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19621025 ~ 19825534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977011.1
CTTAGTTCACAGAGGGGGGACACATGTTGGAGAAGAAAGGGACAGGGaaagtgagagggacagagagaaagagagggaaaaaacaGAGGAAAATAGACTTCTCTGAGACATCTGCGGGATTACtctaatagtgtgtgtgtgtgagtctgtatgTGACTTTTCCTGGACATGGATACCCCACTGACCACCccactcctcctcaccctcctcctccgctccctctccctcactcatgGGGCCATGGACTCCTGCTACGATGACAACGAGGGTGTCCCAAGCCGCTGCATGCCCAAGTTTGAGAACGCAGCCTTCAACCGCACGGTCATGGCCTCTAACGTGTGCGGTTCGCCCACGGAGGACTACTGCATGCAGACGGGCTCGACGCTGTCCTGCCACCACTGTAGAGTGTCGGACCCGGGCCTCAGCCACAACGCCAGCCTGCTGACGGACTTCCACACAGATGAGGAACCCACCTGGTGGCAGAGCCAGTCCATGTTCTACGGAGTCCAgcaccctaactctgtaaacctCACCCTGCACCTCAGTAAAGCCTTTGAGATCACCTACGTGAGCCTGAAGTTCTACACCAGTCGACCGGAGAGCTTTGCCATCTACAAGCGAACAAGTGAGGATGGACCATGGATCCCCTACCAGTACTACAGCGCCTCCTGTACCAAGACCTATGGGAAGAACAACAAGGGATACATTCGCCCGGGGGACGATGAGAGGATGGCAGTCTGCAACGACGAGTTCAGTGACATCTCCCCTCTGACCGGGGGCAATGTGGCCTTCTCTACCCTGGAGGGACGACCCAGCGCATACAACTTTGACCAGAGCGCCGTGCTACagGAGTGGGTGACAGCCACTGACCTGCTCATCTCTCTGGACAGGCTCAACACATTCGGAGATGAGTTCTTCAAGGACGCCAAGGTGCTGCGATCCTACTTCTACGCCATCTCCGATTTCTCCGTAGgcgccagGTGTAAGTGTAATGGCCAtggcagtgagtgtgtgttggacgAGCAGGGGGCTCTGGTGTGTGACTGCCAGCATCACACTGTCGGGGTGGACTGCCAGAGGTGTCACCCATTCTACCAGGACAGGCCTTGGGCCAGGGCCACCGGAGACTCTGCCAACCAGTGTATGAagtgTAACTGCAGTGGGCAggcggatgtgtgtgtgttcgatgCGGAGCAGTACCGAAGCACAGCAAGTGGGGGGCGCTGTGTAGACTGTAGGGACCAGACTGATGGACCGCATTGTGAACGCTGTAGAGAGAACCACTACCGACGGTCACCACAGGACCCCTGCAGCCCCTGTGACTGTAACACCATGGgttCTGTGAATCTGCAGTGTGGTGTGGAGGGGAAGTGTGAGTGCAGACCCAGTGTGTCAGGGGTGAAGTGTGACACCTGTCAACCCGGTTTCCACTCCCTCAGCCCTGGCggctgcagGTTGTGTGACTGTGACCGTAGGGGCAGTGTGGGCGTCTGCTCTGTGCTGGATGGTGGCTGTCACTGCAGGGTTAACGTGGAGGGACAGGCTTGTGACAGgtgtaaGCCAGGCTCCTTCAACCTGCAAGAGAACAATCCAGCTGGATGTTCGCCCTGTTTCTGCTTCAGACACTCATTGGCCTGCAGATCGTCCAAACACCATACAGCTGTCAACATCACATCGGACTTTCTTGAAGaCACAGATGGCTGGTCAGGACAGTTTTCCGGGGGACAGGAGTATCCTCTGCTGTGGAAGGAAGGGGATGTCTACTTGCTACCACTCAGTGAGGATGATCTCGGCTTCTACAGCGCTccagAGAGGTTCCTGGGGAACCATCTCCTGAGCTACGGCCAGCTCCTTTCCCTGACCTTCACGGCCGGGGCCCAGTACCTCCTCCCTCACAGTGCCACAGTGCTCCTGGAAGGATCGGGAACTACCCTGTCAGCTGACCTTTCACCCCAACATGGACCTGTCCACCAGCCGGGCCTTGCTCCCCAGCACACCTTCACTCTCAGACTTCACAAGGAGGAGACGAGGCTGAAGCCTTCATTGTCTGCCTTCCAGTTCCACCATCTTCTCTTCAACCTCACTGCTATACAGATCAGCAACGCAGGAGGACAcaactaCACGTCCCAACTCTCAGGGGTAACCCTGGCTTCCGCTGCCCCCTTCTCCAGTCCTGTtatcccctctacccctcctgcACTCTGGGTAGAGGTGTGTACATGCCCTCCTGGATTTGGGGGTCAGTTCTGTGAGCTCTGTGCCCCAGGATTCAGCAGAGAGGTCCCTAACGGAGGACCCCTGTCTCCCTGTGTGCCTTGCACCTGCCACCAGCATGGACCATGCCACCCTGAGACAGgtgtgtgtgtgtgtatcgacTTCACCACAGGACCAACCTGCGAGCGTTGTCTGGGCGGTTACTATGGTAACGCGTTGATTGGCACGCCCAATGACTGCAGACCTTGCCCCTGCCCGGACCGTACCAGCTGTGCTCAAATGAGCTCTGGGGAGGTGGTCTGTACCAACTGCCCTTCAGGACAGAGGGGCATCAGATGCGAGATGTGCGAGGACAGTTTCCACGGCGACCCCCTGGGCCGGTCAGGGCCAATTCAACCGTGTGAGAAGTGCGACTGTAACGATAATGTGGACCCCAACGCGCTGGGCGTGTGTGATCACATGACGGGCTGTTGCCTGAAGTGCCTGGGACACACCGAGGGAGACCATTGCCAACGCTGCCGACAAGGTTACTATGGGGACGCCCTGGACCGCACTGTGGCCCAGAAGTGCAAACGCTGCGGCTGCAGTCCTGCAGGGACTTCTGGGTCGTTGGAGGACTGTGACCCCCAGACAGGAAGTTGTCTGTGCCTTAGTCATGTGACCGGGCGAGACTGTGGTCAGTGTGAGGTGGGCTTCTTCAACCTGCAGTCTGGAGTAGGCTGTGAGAGGTGCACCTGTAACCCCATTGGCTCATCATCCATGGCTTGCCACCAAATCacaggccagtgtgtgtgtcGGCTGGGACTGGAGGGGCGGCTGTGCAGCACATGTCGTATGGGCTTCTATGGTTTCTCCTCACGGGGCTGCAGAGCCTGTAATTGCGACCCGATGGGTTCCAGCTCCATGCAGTGCCACACCAACGGCACCTGTCCCTGCCGCCAGGGCTTCGTGGGGTACAAGTGTGACCAATGTGAGCTCAACTACTTCCACAACAGAGCCACACACCAGTGTGAGGAGTGCCACGTCTGCTATGGGCTAGTCAAGGAGCAGGCAGGGAGGCTGAAGGCTCGGCTGCAGGATTTGGAGAATCTCCTAGCACGCTTCGACTGCCGGAGTGGCTACGGGAACCACCATGTGCGGGAGTATCACATGCGACAGCTTCACGAGCGACAGCATCACGAGCGTGGGCATCAGGCGGAGGACAGCCTGCCCAATGCGCTGGAGGACTTCCTGGCTATCCAAGAGGCAAAGGAAGCCTTGGTTAAACAGTTTGCTCTCATGGAGACATCTACACACGCTCTCTCAGCCCAGCTGCACAATGTTACCCCAGCTATGAACTGTAGTGCCAGCATGGAaaaagagcaggaggaggagaaaaaagagaaggggaaggaggaCGGGCGGGGAACATTGTGTGGTACCCTTGGCGACGCTCTATCAGTGGTCAGAAGTGCACAGACACAGCTAAAGCAGGCAACACTGGACCTGGACAACATGGTCATTCCTTTCGAGGTGCCACCGGTGCCCAACCGATGGAACTCAGCGGTGAACCAATCAGAGGTCCTTATGAAAAGCCACACAGAGATGTCTGGTCGTATAGAGTCTATAGCTACCAAGGCATTCATGGCCTCCAACCAGACCTACTCTCTACTGATGGACCTACTGGAGGACAACTCTACAAAGGAATACATCAGCAACCTCACAGAGCAactggcAGACATGCAGCAGATAAAGGAGAATCTGACTGCCCAAGTGAATAGGACTCTAGCCAATCAATTGTCTCTGGAGGAGGAGTCTGCTGATGTCTTGGTTGCCCTAGGaaacctcacctcctccctattggaGCTATCCCAGAGGAGGCCCAAATCCACATCAGGAACCAACCAATCAGATCTCAGACCAACACAGGGTTACAACCAATCAGACCCCAGCCTCGCACCGGCTGCTAATCAATCAGAGGATGTTGAGCTAAGCAACAGGACAGCTGAGCTGGCGTTTAATGTCCAGTCTAAAGAGGAGCTGGTCAATAAGATCAGAGAAGAGATGGAGCCTCGCATACAGACCGCTCACAACAAAATGGCTGCTGTAAAGGATATTTACAAGCTGACAGCTCATGCCCAGGGGTCAAAGGTCCTGGCCCTGTCATCGGTGGTGACAGGGAAAGAAATGGAGTCAGAGGTCATCGCCCTGCGGAGAGAACTGGAAGACATGCAGAGAGAGTGGCCTCGAAGGCAGGTCCAGACCAAGGCTGCTCTGAAGAAGGAGACGTTGCTGAGGGAGAAGGTTTTAGAAGACATCAATAAGAAGgtgaaccagacagagagagtccTGAGGCCTGCCCTGGATAACGCTACCCTCTCCAACGCTACTGCAGGACAGGCAGAACACACTGCACACTCCCTGTCTAAAGAGGCCAAggccaccctgaccaaggccaagCATGCAAGGACAGCGTCTGCCCAGCTCAGCTCCTCTGTGGACACAGCCATGCAGCAGCTGGCTGAGCTGGAGAACCACACTGCCCAGGCACAAGCTCAACTCAACGCAAAgCCTGTAGAGTCTCTGACCAGTGTGAAGGGGGACATCCAGGCAGCTAAGTTTCAGCTGGAGGCCTATTCACTCACACTCACCCAGCTCATCAGTAACATGGatgggagcATGGTGCTGGAGCAGTTTGACTGTATCCTGAGTGAGACGGTGGTGCGGTTGGGTGTTCTGCGTGGCTGCGTGGAGAGCCTTGCCCTGAACGTGAAGATCCAGACCCTATGGTCAGCTGCCCAGGACCAGAAGAGCCAACTGACCCACCTGGAACAGGACCTGCAGGAGATAAGACAGGAGCGAGACAGTTTGAAGGACATCGCCCTGCACCTGCCCCAGACTTGCCCCCAGGCCTCGGGGATAGAGGGACACTAGGACTGTGCACCAGGAGGACACTAAAGTCGTATTCCATTCATTTTACTCCCTCCCTGAAGTGCGCACACTCGTTCACTCAACCTCAATGATTTAGTAGAGGGTCTACCATGTTTCTTACAGCAGGAAAATTGGAATTAGACATAAGAAGTTCAGATGGTGGGTAGGTCTCAGATATTTGAATGCTTTAGGGGAGATGtagtctgtcccaaatggcaccctatagtgcattacttttgactagTGCCTGTagagctttggtcaaaagtagtgcactatgtagggaatgtggttccatttgggacacacacagaaGTGTAGGCGGCATCCTCCTCAGTTTATTGATGTTAGTGGACAATACTGTGGTTGTGCATCCCCATCTACTGCAGTGCGGTCACACAGTTCtaccactttgtctctatattttTCAAACTCTCCACTATACTTTTCTGGCCTGGCTGATACCACTTCAATACTACTGTCCAGTCATAGGTAGTTTTCCTTGCCCTCTTTGAACTTCTACCATCATCATGCTCTTTCCGTTAGTTCTACCCCCTCACTCCTTTTTGGCTTTACTTATCTTTCCGTAGCTCATCCCGCTCCCGACTCCACATTACCCCTGCCCTGTCGCCATAGCAGTGATCATTCTCATTTCATTTCCCCCTGTAATATTTCCAACCTCTGCAGTGTAATTAATCAGTGAATAAGTCCGCTATAGCTGCCTGTTCAACAGCCCAGTGTGTCCTGTCAAGTTTAAAATAATGCTGATTGTCCACTAAGGGGGTAGGTGTGTCTGAACTACAGTGCCTCTCCAATGTGACACCTTCATTTACACTTGAGCAATTTTCATCAGCCTTCCATAATTAACAATTAGTCAATTTGCCCTCCATAGGGTTCAACTGCACGCATAGTCATTCATTTTGGGATTCTACATgtgcctctctctttccctctgtctcttttctctctgagCAAATGATCTGTCAAAtggaaaataacaaaaacaatcaACCTGTTGGCTTTCTCCATGCGGGTAACAATGGCTGGAACACTTACTGAATTATAGAAATCTATCGCTAGAAATGGGACCTTTCTATTTCAGACAGAACTTTGTCAGACCAGGAATAGGATATGATTGGTTTTAGATGATAGCCCGGTAAACAAAGTAGAAAACAAGGCCTGGAAATGTAATGATGTATTCCCTCTGCATGTGTGCTCGCACCCAAAATCGTGTGATTTTGTTGATGGTGCTGTTGATTATTATTGGAGAAACTAGCACAGCTATTGATGGCAGCCATCAATAAGACTATAAAGCACACTAAATATATACTGGATCAAATACTGATGATGAAAAGCAATGATAAAGTGTCTAATATCAATAAATTGTATTACATTCATAA
>TU427475
tagTGCCTGTagagctttggtcaaaagtagtgcactatgtagggaatgtggttccatttgggacacacacagaaGTGTAGGCGGCATCCTCCTCAGTTTATTGATGTTAGTGGACAATACTGTGGTTGTGCATCCCCATCTACTGCAGTGCGGTCACACAGTTCtaccactttgtctctatattttTCAAACTCTCCACTATACTTTTCTGGCCTGGCTGATACCACTTCAATACTACTGTCCAGTCATAGGTAGTTTTCCTTGCCCTCTTTGAACTTCTACCATCATCATGCTCTTTCCGTTAGTTCTACCCCCTCACTCCTTTTTGGCTTTACTTATCTTTCCGTAGCTCATCCCGCTCCCGACTCCACATTACCCCTGCCCTGTCGCCATAGCAGTGATCATTCTCATTTCATTTCCCCCTGTAATATTTCCAACCTCTGCAGTGTAATTAATCAGTGAATAAGTCCGCTATAGCTGCCTGTTCAACAGCCCAGTGTGTCCTGTCAAGTTTAAAATAATGCTGATTGTCCACTAAGGGGGTAGGTGTGTCTGAACTACAGTGCCTCTCCAATGTGACACCTTCATTTACACTTGAGCAATTTTCATCAGCCTTCCATAATTAACAATTAGTCAATTTGCCCTCCATAGGGTTCAACTGCACGCATAGTCATTCATTTTGGGATTCTACATgtgcctctctctttccctctgtctcttttctctctgagCAAATGATCTGTCAAAtggaaaataacaaaaacaatcaACCTGTTGGCTTTCTCCATGCGGGTAACAATGGCTGGAACACTTACTGAATTATAGAAATCTATCGCTAGAAATGGGACCTTTCTATTTCAGACAGAACTTTGTCAGACCAGGAATAGGATATGATTGGTTTTAGATGATAGCCCGGTAAACAAAGTAGAAAACAAGGCCTGGAAATGTAATGATGTATTCCCTCTGCATGTGTGCTCGCACCCAAAATCGTGTGATTTTGTTGATGGTGCTGTTGATTATTATTGGAGAAACTAGCACAGCTATTGATGGCAGCCATCAATAAGACTATAAAGCACACTAAATATATACTGGATCAAATACTGATGATGAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977011.1 False 6524 mRNA 0.53 28 19621025 19825534
TU427475 True 1114 lncRNA 0.42 1 19621070 19622183

Neighbor

gene id symbol gene type direction distance location
LOC110523387 LOC106562971 coding downstream 2956 19590144 ~ 19618069 (-)
LOC110523382 prkaa1 coding downstream 40709 19561879 ~ 19580316 (-)
LOC110523384 LOC106568686 coding downstream 61271 19507723 ~ 19559754 (-)
LOC110523380 LOC106568716 coding downstream 192211 19396185 ~ 19428814 (-)
LOC110523379 LOC106568729 coding downstream 245790 19363387 ~ 19375235 (-)
LOC110523392 NA coding upstream 218709 20044243 ~ 20051842 (-)
LOC110523394 LOC100194676 coding upstream 1017857 20843391 ~ 20851224 (-)
LOC110523399 LOC106568557 coding upstream 1182391 21007681 ~ 21018966 (-)
LOC110522820 LOC105889199 coding upstream 1334747 21160281 ~ 21162494 (-)
LOC110523403 ubb coding upstream 1347110 21172644 ~ 21175591 (-)
G375817 NA non-coding downstream 30888 19589895 ~ 19590137 (-)
G375815 NA non-coding downstream 32665 19524385 ~ 19588360 (-)
G375821 NA non-coding downstream 124567 19495942 ~ 19496458 (-)
G375720 NA non-coding downstream 131303 19489521 ~ 19489722 (-)
G375711 NA non-coding downstream 135651 19485149 ~ 19485374 (-)
G376129 NA non-coding upstream 3703 19829237 ~ 19829453 (-)
G376241 NA non-coding upstream 87685 19913219 ~ 19913484 (-)
G376246 NA non-coding upstream 89657 19915191 ~ 19915408 (-)
G376283 NA non-coding upstream 121345 19946879 ~ 19947298 (-)
G376602 NA non-coding upstream 157491 19983025 ~ 19983894 (-)
G374786 NA other downstream 1061858 18558140 ~ 18559167 (-)
G374189 NA other downstream 1617855 18002820 ~ 18003170 (-)
LOC110523354 LOC106569496 other downstream 2099538 17483696 ~ 17521507 (-)
G373228 LOC106569424 other downstream 2495218 17124037 ~ 17125807 (-)
LOC110523341 LOC106569324 other downstream 2678834 16909582 ~ 16942359 (-)
G377800 NA other upstream 868562 20694096 ~ 20694708 (-)
G377809 LOC106568602 other upstream 879079 20704613 ~ 20705140 (-)
G377991 NA other upstream 1203924 21029458 ~ 21029783 (-)
G378359 NA other upstream 1966128 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 2351731 22177265 ~ 22179322 (-)

Expression


Co-expression Network