LOC110523399 (LOC106568557)


Basic Information

Item Value
gene id LOC110523399
gene name LOC106568557
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21007681 ~ 21018966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602066.2
CAAATGCTTGGCTTTGTGATGAGCGCATAGTGTGCGTCCTTCCCAGCCTGTGCGCGACAAGAAAAAAGGTTTACTGTTAACGGGAAAGTAAACACGAATATGGAGAACGAAGACCATTTCAATCCCAAAGCTTTTCACCTGTAACTCAAATTACAAAACTTTCTTGTCCATTTGGGAGAGAGAAGTGCGTACATCTGACAAGTGAGACGGTCAACAGAAGAAAGTAACTAGACTGTTTTTACTACTGCGATATTCGCCCAGATCAACATTCCATTCACTTTCTTTTTTCGGTTACTATCAACATATTTGGGGGTTTATAACCCTCAGCATCAAAGCTAAACCTCAGAAGATGGTTTTGTTGTGAAACGATCACACAAGGTTAGGCTACTGGGAATATCTCTATTTATTCTTCAAATATAATATTTATTATTTTAGCTATTACTATTTGGATTATTACTCTTTCAACACAAAATATCCGATCTAAAGATGGACTCGTTTTTGAACACCACGGATAACTACCTTTCCATTAACGCCACTAACGGCTCCGGTTTGAACGACACAGAGGGATATAACCAGTTCGTGCAGCCGATCTGGCAGATCGCTCTCTGGGCCATCGCCTACTGCAGCATGGTGTGCGTCTCGGTGATCGGTAACCTGGTGGTCATCTGGATCATCCTCGCGCACAAACGCATGAGGACCGTGACCAACTACTTCCTGGTGAACCTAGCCTTTGCAGAGGCATCTATGTCTGCCTTCAACACAGTGATAAACTTTGCATACAGCATCCATAACGAGTGGTACTTTGGTTTGGGCTACTGTCGGTTCCATAACTTCTTCCCCATTGCAGCAGTCTTCACCAGCATATACTCCATGACCGCCATAGCACTGGAAagGTACATGGCTATCATCCACCCCCTGAGGCAGAGGTTGTCTTCAGCAGAGACCCGTGTAGTGATCGGAGGGATCTGGGTGTTAGCTCTACTATTGGCCTTCCCCCAGTACTACTACTCAGCTACTGACCAGCTGCCTGGTAGGACTGTTTGTTACATCCAATGGCCTGAATACACCAATGACACAACCATGGACTTCAAAAAGATgTACTCTGTGTCTGTGGTGTTGCTGTACTACTTCCTGCCGCTGTGCATTATGGGATGTGCCTACCTGGTGGTGGGCTCGTCCCTGTGGGCGGGGACTATCCCTGGAGACTCCACCCACCGCTACCGAGAGCAGCTAATCGCCAAAcgcaaggTCGTGAAGATGATGATCGTGGTGGTGTGTACGTTTGCAGTGTGCTGGCTGCCTTACCACATCTACTTCCTGCTCCAGCAGTTCCACCCTGACCCCATGCAGCTGTTTGAGTGGCGCTACATCCAGCAGGTCTACCTGGCTGTCCTGTGGTTGGCCATGAGCTCCACCATGTACAACCCTATCATCTACTGCTGTCTCAATGACAGATTCAGGGCAGGCTTTCAGCAGGTGTTCTGTTGGTGTCCGTGTGTTCCTGCCGCCTCCTACGAGGGACTGGAACTCAAGTCCACCCGCTACCTACAGACCCAGATGAGTGTGTACCGGGCCAGCCGGATGGAGACCAGTATGTCAACAGTTCTGCAGCCCACTGAGGAGGAGCGCTGTGGGGCagagcagccagccagcccccCTATCATCCAGACAACCATGGAGCTCACCTCCACCTCCAACGGCTCAGCCTCACGATCAGCCCTCAACCCCCCCGACAGCCCTGCTTACTACGGCAGACATAACATGGACTAGTGGCCTAACAAACGCCTAACTGAATTAGTCGTGGTTTAATGTCacttaacccagaactaaaatgtTACGTCATTTGGTCAGCTGCTCGATTAGGTTCTAGTGGGAAGTGTGTTAGAAATGGAGATTTCCGTTTTGTCTCCACTCTCACAAAAGGAAAATCTCAGTCAATCCCTCCCACCCCCTTCTGATATTTTCACCGGTGGTTATCATCCGCCGAAGTAAAGCAGTTTAAGCACCGCCTTCACCCAATCCTGATATGTCCAAATAAACAGTGATGAAAACCCAAACCCCAGAACTATTGCTGCTCGTATCCCATATTATGCCGACAGGTGTACTGTACCAGTTATGTTTACTGTAGGTACTGTCCACGGGAGATTATACGTGGTTTAGTGCACTATAGCCTGGGCTAGTGCTCTATTCTCACACATTCTAATGCCGACACATCGGCTAGGGctgcctcaattcgttgggggatggactctacaaggtgtcgaaaacattccacagggatgctggcccatgttgactccaatgcttcccttgctttttttgtgagtgtttttgtgtGAAAGTCAGGCAGTGTGTTAATTTCTtcatacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttccggGAGGTGATGTGTGTTGGTTCAGCACCTGTTGTCAGGGATTACTGCTCAGAGACGACAATTTGAGGAGCAGTACTCTGTCTGCCTGGTCAGAACAAAGGTCAGATATATATagacaggagaggaaagagggggacaCAAATAGAGTctagaagaggggggaggagagtagaggaagaaaggagggaaaaCAGTGAGACGGGTCAGTTGAAAGAGAGGAGGGATCAGAGTGAGAGGGGTCagtaggaagagaggagggatcaGAGTGAGAGGGGTcagtagaaagagaggagggatcaGAGTGAGAGGGGTcagtagaaagagaggagggatcaGAGTGAGAGTGGTCATTCAAAAGAGAAGAGGGATCAGTGAGAGGGGTCAGTTGAAACAGAGGAGGGATCAGTGTGATAGTGGTAagtaggaagagaggagggatctGTGTGAGTGGTCATTCAAAAGAGAGGTGGAATCAGAGTGAGAGTGGTCATTCAAAAGAGAGAAGGGATCAGAGTGAGAGTGGTCATTCAAAAGAGAGAAGGGATCAGAGTGAGAGTGGTCATTCAAAAGAGAGAAGGGATCAGAGTGAGAGTGGTCagtaggaagagaggagggatcaGACTGAGAGGGGTCagtgagaaaagagaggagggatcaGAGTGAGAGTGGTCagtaggaagagaggaggaatcaGAGTGAGAGTGGTCagtaggaaga
>TU429630
tcaGAGTGAGAGGGGTcagtagaaagagaggagggatcaGAGTGAGAGTGGTCATTCAAAAGAGAAGAGGGATCAGTGAGAGGGGTCAGTTGAAACAGAGGAGGGATCAGTGTGATAGTGGTAagtaggaagagaggagggatctGTGTGAGTGGTCATTCAAAAGAGAGGTGGAATCAGAGTGAGAGTGGTCATTCAAAAGAGAGAAGGGATCAGAGTGAGAGTGGTCATTCAAAAGAGAGAAGGGATCAGAGTGAGAGTGGTCATTCAAAAGAGAGAAGGGATCAGAGTGAGAGTGGTCagtaggaagagaggagggatcaGACTGAGAGGGGTCagtgagaaaagagaggagggatcaGAGTGAGAGTGGTCagtaggaagagaggaggaatcaGAGTGAGAGTGGTCagtaggaagagaggagggatcaGAGTGAGAGTGGTCagtaggaagagaggagggatcaGAGTGAGAGTGGTCagtaggaagagaggaggaatcaGAGTGAGAGGTGTCagtaggaagagaggagaggtagaggaaaaACAGTATACTCTTCTGCCTCTCTAAGCCCcatctgtattatattatattcatatTTATGTAGTTATCTGTATTACCTCATCTGTTCACACACAGAGTATGGAGCAGGGCCATGGGGG

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602066.2 False 3243 mRNA 0.49 7 21007925 21018966
TU429630 True 665 lncRNA 0.47 1 21007681 21008345

Neighbor

gene id symbol gene type direction distance location
LOC110523394 LOC100194676 coding downstream 156701 20843391 ~ 20851224 (-)
LOC110523392 NA coding downstream 956083 20044243 ~ 20051842 (-)
LOC110523381 LOC106568667 coding downstream 1182391 19621025 ~ 19825534 (-)
LOC110523387 LOC106562971 coding downstream 1389856 19590144 ~ 19618069 (-)
LOC110523382 prkaa1 coding downstream 1427609 19561879 ~ 19580316 (-)
LOC110522820 LOC105889199 coding upstream 141315 21160281 ~ 21162494 (-)
LOC110523403 ubb coding upstream 153678 21172644 ~ 21175591 (-)
tpst2 LOC106568446 coding upstream 157182 21176148 ~ 21182983 (-)
LOC110522821 LOC106568453 coding upstream 164721 21183687 ~ 21271783 (-)
LOC110522822 myo18b coding upstream 271200 21290166 ~ 21353241 (-)
G377978 NA non-coding downstream 623 21006718 ~ 21007302 (-)
G377972 NA non-coding downstream 10792 20996914 ~ 20997133 (-)
G377970 NA non-coding downstream 14286 20993068 ~ 20993639 (-)
G377904 NA non-coding downstream 63897 20943599 ~ 20944028 (-)
G377903 LOC106568504 non-coding downstream 64402 20940321 ~ 20943523 (-)
G377987 NA non-coding upstream 3913 21022879 ~ 21023351 (-)
G377995 NA non-coding upstream 14931 21033897 ~ 21035828 (-)
G378000 NA non-coding upstream 29259 21048225 ~ 21048524 (-)
G378008 NA non-coding upstream 46539 21065505 ~ 21067811 (-)
G378025 NA non-coding upstream 67761 21086727 ~ 21110446 (-)
G377809 LOC106568602 other downstream 302785 20704613 ~ 20705140 (-)
G377800 NA other downstream 313217 20694096 ~ 20694708 (-)
G374786 NA other downstream 2448758 18558140 ~ 18559167 (-)
G374189 NA other downstream 3004755 18002820 ~ 18003170 (-)
LOC110523354 LOC106569496 other downstream 3486438 17483696 ~ 17521507 (-)
G377991 NA other upstream 10492 21029458 ~ 21029783 (-)
G378359 NA other upstream 772696 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 1158299 22177265 ~ 22179322 (-)
jmy LOC106568093 other upstream 1780734 22799696 ~ 22859199 (-)
LOC110522831 LOC106563032 other upstream 2528234 23488916 ~ 23556681 (-)

Expression


Co-expression Network