LOC110522821 (LOC106568453)


Basic Information

Item Value
gene id LOC110522821
gene name LOC106568453
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21183687 ~ 21271783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977028.1
ctgagaggggggagagagagatcagggcagaagaggaagaagagaccCAGCAGATTGCGGGGTTCGGGCGAGAGAGGCATGACATACGGACCGCAGAGAAACCCACCACACTGACCCTCACAGTGCGCCTTGAGGAGAAAAACAAGCAGCGCGTCACATCTAGAAGATCCCTGCTGCGCGAGCACAACTGTCGCGGTGCAGATCGAACGTCGACCACCACCCAACTATTCTCCTCGTGCATCTCCCGTTAGCAGTTCTCTCTGGACCGACCGGCTCTGCCTGGCTGTGTGGAGCCATGCCACCATGCCGTTACCGAATCGGTGCCCTGCCAGCACTGCTCTGTCTCTGTATCGGTATGATTTGGACCGGCGTCGCGGCAGAAACACAAGcTGAGATCGACACCACACCTCcactttcctccccctccccctctccagccATAGGGAACACAGACAGAAACTCACCCAGGGGTAGAGGGCCCGAGGCTGGGTTAGGGCCCGGGGTGGGGATGAGTGCCGCTGGTGATCTGCTAGAGTCAGTCCTGGCTCAGAAGGATCATCTCTTCTCCCAGACAGGGGGAATGGTCCTGCCCTCAGCTCTGCCCCAGGACCTGCTGCCTCTCCTGGGGAGAGAAATGAGCACAGGGGGCCTGTCTGGAGGTCTGTCTCTGGATCAACAGGATCTGTTGAAGAGGATACAACCCCCAGTTTCACAACCCCACGACAGCGGATCACCCCTCCCTTCACAGCTCTCCCAGCCCGACAGCaaccccctcacctcctcctctcagccCGTGACACACACACCGCCGGGACAGCGAGATGAGGTCACCACTATCGTCAAGGCGACTGTGGACGCAGACACAGACATGGATGCAGAAACACCTTCACCGGcTGTGTCTGGCTGTATGGTGAATTTCTCCGACCCCGAGGGATACATAGACTCTTCTGACGACCCCCCCCTCCCAGATGGAACATTCCTACACTGTACATACACCGTCACTGTGTACACAGGCTATGGAGTCGAGCTAcaggtgAAGAGTGTGAATCTGTCAGAGGGAGAGCAGCTGTCAATCAGAGGGGTGGATGAGGGCGGGGCCTTGCTGGTTCTGGCCAATCACACACTGCTGGTGGAGGGTCAGGTGATCCGAAGTCCGACCAATACCATCTCAGTATACTACCGCTCCTCGCCTGAGGGGAGCATAGGCATGTTCCAGCTACACTACCaaaTATTCCGTCTGAGCTGTGCCCTGCCGAGGAGGCCTCACTTTGGGGAGGTGTCCGTGCTGGACTTGCTGCCAGGGGGCACTGCCCGCTTCCACTGCCAAATGGGCTACCACCTGCAGGGGGCAGTGGCACTCACCTGTCTCAACACATCTCTGCCTGTCTGGAGTAGCAAGGAGCCAAGCTgtagagCGCTGTGTGGAGGGTCAGTGAAAAATGCTACAGTAGGGAGAATCTTGTCCCCCTCTCCCCGCCTGGGTCCCACTGCCACCCATGACCGCTCCTGCTCCTGGTCCCTGGAGGCCCCCACTGCACAGAGACTACACCTGCACCTGGAGAGACTGGCCCTCGAACCCActgacagACTTGTGTTATGGAGCGGTCTGGATGCTGGGTCTGTGGTGCTGTTTGACTCTGGGCGGGGTGGTCCAATACCATTTGAAGGGGTGATCAGTGAGGGTCCAGCAGTCAGGGTTCAGTTCATCACAGACCAACCTAACCACAATACAGGCTTCAACATCCGTTATGAGGCTTTTGAGCGTGGGCACTGTTATGAGCCCTACCTGCAGAATGGTAACTTCAGCACCACTGACCAGGTTTATGGGGTTGGAGCTGTGGTGCAGTTCAGCTGTGATCCTGGTCACTCTCTGGAGCAGGGGCCGCCCGTCATAGAGTGTATCAATGCCAGAGACCCCTACTGGAACGACACGGAACCACTCTGCAaagctctgtgtGGGGGGGAGCTGGCAGGTCCAGTGGGTGTTATCCTGTCTCCTAACTGGccagagtggtatggagagggagaggactgcagctggaggatacatgtagaggaGGACAAGCGCGTGCTGCTCAACGTACAGCTtttgaACCTAAGTGACAGTGACATGTTGACCATCATGGATGGTGATGAGGTCACCCCCCATATTCTGGGCCAGTACGTGGGTGGGGCTGGGCCCTTCAAGATACAGTCCACAACCCCTGACCTCACCGTGACCTTCCACTCCGACCCTGCCGGCCTTGTCTTCGGCAAGGGAGAGGGCTTCATCATCAACTACATGGAGGTGTCCCGTAACGACTCGTGCCCGGACCTCCCGGAGATCCAGAATGGCTGGAAGACCACGTCCCATACTGCCCTGGTGCGGGGTGCTCGCATCACCTACCAGTGTGACCCCGGCTATGACCTGGTTGGACGAGAGACTCTGACCTGTCAGCTAGATCTCACCTGGAGCACACAGCCCCCCTTTTGCGAGAAGAtaatGTACTGTTCAGATCCGGGTCATGTAGAACATTCCACCAGGTCTCTGTCAGACCCTAAACTCCTGGTTGGGACCACCATCCAGTACAGCTGCTACCCCGGCTTCATCCTGCAGGACGGCTCTACACTCACCTGCTACGGACGAGAGCCCGGAACCCCTGTCTGGACATCCAAATTGCCTCACTGTgtctcggAGGAATCTGTTTCCTGTGAGAACCCTGGTCTTCCTGACAACGGGTACCAGGTCCTGTCCAAGCGTCTCTACCTGCCCGGCGAGTCGCTCACCTTCGTCTGTTACCAAGGTTATGAGCTCATCGGCGAGGTCGCCATCAAGTGTATCCTGGGAAATCCGTCATTTTGGAGCGGACCACTCCCTCTGTGCAGGGCCAACCATGACTGCTTTGGCAACCATGCTTTGGAagttGCGGAAGCAGCTGCCGGGTCAGGTCTGGATGGAGGTAACATGGCATTGGCTATCTTCATCCTTGTACTTTTGCTCTCCGTGCTGCTGGGAGGAGCCTATGTCTACGTCACACGGTGTCGCTACAACTCCAACCTGCGGCTGCCACTCATCCACCCACACCCCTACAGCCAGATCACAGTGGAGAGCGAGTTTGACAACCCACTCTacgagacaggaggggacaCCCGTGAATATGAGGTATCAATATGATGACTTTCTCAACTGTCAGAATCCCAAAATGAAGAAGCTTCCACCCACCCAACCAAACCCACTCCCTTACCCTTTCTCCTCCTCAGCCCCACCAAAAAGGAAGTGATGTAAATACAGACTGACTATAGATCTGCCCCTTCCCCCCATGACCCTGTCCTCCAATCACAGAAAGAGGAAACAGCGAGAGGGAAGATGAGTAGGAAAAGgaatggagtggagaggagagggggagaaaataggaagagaggacaggagatactgggtgtttctcaatattcTTACTACCATTCTCTGAGCATGGTTGGAGGATGAGTCCAAATCAAAATATGCGAAATGGGGTGCGTAATTTGCttgtaaacatttcgaagtgtGCAAGCTTCAACTGAAATATTCCCAGGATTGTTGACGCAATCACATAAAAAACAATGCAACATTTCTTGAAATCAATGGTGGCTGGATTTGAGCTGAACCGAGAGAAAATGAACTCCGACTTTGAAATGAAAAGTTGCCCACTCACATCTCATATGTTCCCTGACAACAATATTTTATCTTGATCTTGTTCATTTTGGCATATTTAACTGCCTAGAATATCCACTGTAGTAGTGTGCATAGACTGCAGGCTAACTGATGAAGAATTggtagctaactttagctagctactgttatcCACAAATAATTCGTAGCTAATGTTGGCCATCCACCCTTCATAACATTTCGTTttaggttgttgtttttttgtacaactagctggctagctagattaATCCGATTCACATATAGCCAGCTGATAATTACAAGCTTGGGTTTGCTTTATGTAGTTTGTGTTTTGTCTGTATTGGTCAAAGTTAATACAATAGAACGGGAGTGCGCAGTGCTTCTCAAATGTACATTTGTATGCATTCTCCACACTCTCGTCCTCACAAGAATGTACTCAAGAGAACGTCCTCGGAGAACGAACTCggagcatgagagtgtggagcaTGGCAGcagcatattgagaaacacccactGTGAACAGGGCTGCAGGCGTTGGGAGATAAAGAGACAAACACTATTTACTCATGTGTCTACTATTAGCTGTCAAATACAGGGACAGAGGGGAAGGAataggtggggagagagggagacagaaggaggatGATGGGTGAGAGGTATGGAAGGGGTggcagaaagaggagaggatagaaccaAAGGGAACTAAAGTATTGGTACATGAATGGGGTCCATTGAGATGTAAAACGTAGGGGTAAATTGGCACCTTAGAATCTGACAGAGGAAGTGAGGTTACTATCTCTTCCTGTCTGGGCCCCATCTCTGAATTTCTAAGGCCTTGTCTTAGAACAGTTTGTAGTACTGGTTTTACCATAGTAACTGACCTTCCATGTGCAAGCTTACCAACCAACCATAACAACACCAGAAAAGACCGGCACCagattatgtatttattttgatgtaaatgtgatgttttttgCAGATTAATTCATGTACATTTtcattttgagagaaaaaaatcaaaTATGTACCATGTTACTGATTTCCTGAAATAAATGGTCAAATAAAAAGTATAATAGAatctttcaaaaaaaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: seizure 6-like protein

GO: NA

KEGG:

id description
K24363 SEZ6; seizure protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977028.1 True 4755 mRNA 0.52 17 21183687 21271783

Neighbor

gene id symbol gene type direction distance location
tpst2 LOC106568446 coding downstream 704 21176148 ~ 21182983 (-)
LOC110523403 ubb coding downstream 8096 21172644 ~ 21175591 (-)
LOC110522820 LOC105889199 coding downstream 21193 21160281 ~ 21162494 (-)
LOC110523399 LOC106568557 coding downstream 164721 21007681 ~ 21018966 (-)
LOC110523394 LOC100194676 coding downstream 332463 20843391 ~ 20851224 (-)
LOC110522822 myo18b coding upstream 18383 21290166 ~ 21353241 (-)
grk3 LOC106568375 coding upstream 90022 21361805 ~ 21441880 (-)
LOC118964573 NA coding upstream 100842 21372625 ~ 21375057 (-)
LOC110523405 LOC106568369 coding upstream 189038 21460821 ~ 21464192 (-)
LOC110523410 LOC106568355 coding upstream 264145 21535928 ~ 21537727 (-)
G378064 NA non-coding downstream 11761 21171276 ~ 21171926 (-)
G378065 NA non-coding downstream 13767 21167715 ~ 21169920 (-)
G378062 NA non-coding downstream 16600 21166883 ~ 21167087 (-)
G378061 NA non-coding downstream 16822 21166613 ~ 21166865 (-)
G378059 NA non-coding downstream 17591 21165731 ~ 21166096 (-)
G378124 NA non-coding upstream 5868 21277651 ~ 21292814 (-)
G378156 NA non-coding upstream 107806 21379589 ~ 21380165 (-)
G378157 NA non-coding upstream 108739 21380522 ~ 21381024 (-)
G378158 NA non-coding upstream 109436 21381219 ~ 21381592 (-)
G377991 NA other downstream 153904 21029458 ~ 21029783 (-)
G377809 LOC106568602 other downstream 478547 20704613 ~ 20705140 (-)
G377800 NA other downstream 488979 20694096 ~ 20694708 (-)
G374786 NA other downstream 2624520 18558140 ~ 18559167 (-)
G374189 NA other downstream 3180517 18002820 ~ 18003170 (-)
G378359 NA other upstream 519879 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 905482 22177265 ~ 22179322 (-)
jmy LOC106568093 other upstream 1527917 22799696 ~ 22859199 (-)
LOC110522831 LOC106563032 other upstream 2275417 23488916 ~ 23556681 (-)
G380610 LOC106567829 other upstream 2438015 23709798 ~ 23711891 (-)

Expression


Co-expression Network