LOC110523403 (ubb)


Basic Information

Item Value
gene id LOC110523403
gene name ubb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21172644 ~ 21175591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602075.2
CTAGAGAACGTCGACTCACTCTTTTTGCAAATTTCTACCTCCGCCAATGTACGACTTCTTTTATATGACCATTCTTACACTATTTCTTAAAAATTAAACATTCATATAGAACATTTGGAATGTCATACACGTCGTGGAGTTAGTCCATTTTATCCACAATCCATATGGTTAAGGATCTTTTTTGAAAATCCGCAGTTTATAGTTCCATATGGTGTAATGGTGGAGGGATACGTAACCGGCAATGTATAAATAACACAGCCCTTTGTTTGCGATAACAGCCTCGCTTCCTGAAGATTCAAGAGCAGCGCCGTTGATCATTTGTTTTGTCAAGATGCAGATCTTCGTTAAAACCCTGACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCcccagaccagcagcgtctgatCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGGTATGCAGATCTTCGTTAAAACCCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCcccagaccagcagcgtctgatCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTTCGTCTGAGGGGAGGTATGCAGATCTTCGTTAAAACCCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCcccagaccagcagcgtctgatCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGGTATGCAGATCTTCGTTAAAACCCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCcccagaccagcagcgtctgatCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGGTATGCAGATCTTCGTTAAAACCCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCcccagaccagcagcgtctgatCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTCACCTGGTCCTGCGTCTTCGTGGAGGCAACTAGTTCTACTCTTAACAATGTCACATCTTAACCCCAATTTTCCTCCCAAATTCCCTCCTAACCTCCAACCCCACCATTTGACCTCACTCCAATCCCACCCCTGACTTCCCCTCCACCCTAATCCCcagctctttaaaaaaaaaatcaataaagTTCAAGCATTCCTGATATTATCTGGTTGTTTTTTGTAGTAAAATATTTACGTATTT

Function

symbol description
ubb Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to several human genes including UBC (ubiquitin C).

NR:

description
PREDICTED: polyubiquitin-B isoform X3

GO: NA

KEGG:

id description
K08770 UBC; ubiquitin C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602075.2 True 1683 mRNA 0.51 2 21172644 21175591

Neighbor

gene id symbol gene type direction distance location
LOC110522820 LOC105889199 coding downstream 10150 21160281 ~ 21162494 (-)
LOC110523399 LOC106568557 coding downstream 153678 21007681 ~ 21018966 (-)
LOC110523394 LOC100194676 coding downstream 321420 20843391 ~ 20851224 (-)
LOC110523392 NA coding downstream 1120802 20044243 ~ 20051842 (-)
LOC110523381 LOC106568667 coding downstream 1347110 19621025 ~ 19825534 (-)
tpst2 LOC106568446 coding upstream 557 21176148 ~ 21182983 (-)
LOC110522821 LOC106568453 coding upstream 8096 21183687 ~ 21271783 (-)
LOC110522822 myo18b coding upstream 114575 21290166 ~ 21353241 (-)
grk3 LOC106568375 coding upstream 186214 21361805 ~ 21441880 (-)
LOC118964573 NA coding upstream 197034 21372625 ~ 21375057 (-)
G378064 NA non-coding downstream 718 21171276 ~ 21171926 (-)
G378065 NA non-coding downstream 2724 21167715 ~ 21169920 (-)
G378062 NA non-coding downstream 5557 21166883 ~ 21167087 (-)
G378061 NA non-coding downstream 5779 21166613 ~ 21166865 (-)
G378059 NA non-coding downstream 6548 21165731 ~ 21166096 (-)
G378104 NA non-coding upstream 62844 21238435 ~ 21239793 (-)
G378070 NA non-coding upstream 89975 21265566 ~ 21268240 (-)
G378124 NA non-coding upstream 102060 21277651 ~ 21292814 (-)
G378156 NA non-coding upstream 203998 21379589 ~ 21380165 (-)
G377991 NA other downstream 142861 21029458 ~ 21029783 (-)
G377809 LOC106568602 other downstream 467504 20704613 ~ 20705140 (-)
G377800 NA other downstream 477936 20694096 ~ 20694708 (-)
G374786 NA other downstream 2613477 18558140 ~ 18559167 (-)
G374189 NA other downstream 3169474 18002820 ~ 18003170 (-)
G378359 NA other upstream 616071 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 1001674 22177265 ~ 22179322 (-)
jmy LOC106568093 other upstream 1624109 22799696 ~ 22859199 (-)
LOC110522831 LOC106563032 other upstream 2371609 23488916 ~ 23556681 (-)
G380610 LOC106567829 other upstream 2534207 23709798 ~ 23711891 (-)

Expression


Co-expression Network