G378070


Basic Information

Item Value
gene id G378070
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21265566 ~ 21268240 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU429749
GAAATAACTACCCTAAGCTATTTTAGCCGTTAAAGTTAGGGGTCAGTGGTTAGAATCACATTTATGCACAGTATAAGGTGCAGTAAGCCCATTCTAGCTGGGCCCAGTTTAATACTAACTGTCACCTTAGGGCCAATGGCTGTGAGTTGAGTTTGAGGTTCCAGTTGATTGGCACGATCAGGATAGTTTCCAGCCCAGCTTTTTATACAGCTAATATTTCATCTTCTCTTTGCTTCATCCCTCATCACCATTATCTGAACAGACCCCTCGTCTGTCTACCCTTCATTACAGAGTTCCATTGAAGAGCCTGCCTGGTCCCGTTCCAGGGAATGTGTGCGTGTTCGTGTGTGATGATAAGAGAAGGTAGAAGCAATACTCAGAGTGATGCCGGTAGCGACGTCTGTCTGGCATAATGTTAAATGCAGTGGCTTGCGATCCACCCTCATttacatttttcctattttgttgcctttcaacctggaattaaaattgattttgggggaaggttgtatcatttgatttacacaacatgcctacgactttgaagatgcaaaatattttttatcgtgaaacaaacaagcaataagacaaaaaaaaaaaacttgaacatacataactattcacccccccaattcaatactttgtagagccaccttttgcagcaattacagctgcaagtctcttggggtatgtctctataagcttggcacatctagctaatgggatttttgcccattcttcaaggcaaaactgctccagcaccTTCAAGTTGGATGAGTTCAGCTGgggtacagcaatctttaagtcatatcacatattctcaattggattgagttctaggctttgactaggccattccaagacatttaaaagttttgccttaaaccactcaagtgttgcttgaGCAGTATGCTTAGCgtcattgtcctgctgggagGTGAACccccatcccagtctcaaatctctggaaggctGAAACAggcttccctcaagaatttccctgtatttagtgccatccatcattccttcaattctgaccagtttcccagtccctgccgatgaaaaaatatccccatagcatgatgctgccaacaccatgcttcactgtggggatggtgtcctcggggtgatgagagttgttgggtttgcgccagtcttagtgttttccttgatggtgtcatgacgttggcctgggggtagatttatgacagtcataaatacctcttcccccctttttcctctctctctaccctactgatgtgaaatttaaaaaccccttggttaacatagagattctgggtacatcagaaggtggggggaaattaactatattctggtaatccgaccaactgaacatatgcggtggtacttaatgaacaGTTCGgttgatgtcagttcggttgtcatctgagacattctcctcAATGATAGGaggacataaactctacagtggaaagtctacacatcagagttatcggattcacatggaattgttgttcaatttaaatgtttgaatataaaattattggtgaagagattaaatgtaattttagcttccaaattagagatttgggttttcataaggttagcgctctcccttcctatataaagccttgatgaaaatgtaaccttctgttccaagactaacatgtcaactacagaactaagccaacctcagcgtgagctttggttgcgaatggtatgaacattgaactcttattcactacagaggtgatacctcctagccattgagttagcaacagcagctgcaaacgtgggctaggaaagaacagacagagtattctGTCTACCAaacaatgacgttactacaacgtatccaattgaccaccagagacattcttcaaaggacaaaggactcggtttggcaacacggccttccatctaccaccaacctaccgaagcacagctcagagtaaatatttattgcattttccttttccaaatgggcggtaatttagactgcataagatactgtatttacgatagcacagcttctccctttgtccctcagtcttcccgctctttcactcaaacccagccccttttcttttgtgtaaccagctgtcatatctgctccgtccgctagggacgttttcctttatgacgtaattggtaatcaaggtatgattcattctttgtatatgtaattctgtgtgattagttaggtatttagtaaatgttaagggatttttatgaataatgactaaattatgtatacattgAAATCAGAACTATgactaaacagaatactactatgttactgtatggatgtatgaatcttattataatcataatactgaatgtaatgtgtgtagtTTTCATCCAGAATTaggactgtctgttccttgttagaaacgaATGGAGTCATCGTCAGACCGGCTGCAATattgtgttccttacaggacatcctGTCTCTACCCGGGGAGGGGATAGACCTTGGGCTAATAATATATTATTTAACAGGTGGTAgacaatgtgggaaggcttgtaaactatactgccattgtatcAGAGTGGAGGAAGGACATTTTAAAACCTATGATGTCATTTTTAGTGTATAACCTGATGTATATTGTACTATGggcagtactctcgagaataaacgctattgattgattttga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU429749 True 2643 lncRNA 0.41 2 21265566 21268240

Neighbor

gene id symbol gene type direction distance location
tpst2 LOC106568446 coding downstream 82583 21176148 ~ 21182983 (-)
LOC110523403 ubb coding downstream 89975 21172644 ~ 21175591 (-)
LOC110522820 LOC105889199 coding downstream 103072 21160281 ~ 21162494 (-)
LOC110523399 LOC106568557 coding downstream 246600 21007681 ~ 21018966 (-)
LOC110523394 LOC100194676 coding downstream 414342 20843391 ~ 20851224 (-)
LOC110522822 myo18b coding upstream 21926 21290166 ~ 21353241 (-)
grk3 LOC106568375 coding upstream 93565 21361805 ~ 21441880 (-)
LOC118964573 NA coding upstream 104385 21372625 ~ 21375057 (-)
LOC110523405 LOC106568369 coding upstream 192581 21460821 ~ 21464192 (-)
LOC110523410 LOC106568355 coding upstream 267688 21535928 ~ 21537727 (-)
G378104 NA non-coding downstream 25773 21238435 ~ 21239793 (-)
G378064 NA non-coding downstream 93640 21171276 ~ 21171926 (-)
G378065 NA non-coding downstream 95646 21167715 ~ 21169920 (-)
G378062 NA non-coding downstream 98479 21166883 ~ 21167087 (-)
G378061 NA non-coding downstream 98701 21166613 ~ 21166865 (-)
G378124 NA non-coding upstream 9411 21277651 ~ 21292814 (-)
G378156 NA non-coding upstream 111349 21379589 ~ 21380165 (-)
G378157 NA non-coding upstream 112282 21380522 ~ 21381024 (-)
G378158 NA non-coding upstream 112979 21381219 ~ 21381592 (-)
G377991 NA other downstream 235783 21029458 ~ 21029783 (-)
G377809 LOC106568602 other downstream 560426 20704613 ~ 20705140 (-)
G377800 NA other downstream 570858 20694096 ~ 20694708 (-)
G374786 NA other downstream 2706399 18558140 ~ 18559167 (-)
G374189 NA other downstream 3262396 18002820 ~ 18003170 (-)
G378359 NA other upstream 523422 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 909025 22177265 ~ 22179322 (-)
jmy LOC106568093 other upstream 1531460 22799696 ~ 22859199 (-)
LOC110522831 LOC106563032 other upstream 2278960 23488916 ~ 23556681 (-)
G380610 LOC106567829 other upstream 2441558 23709798 ~ 23711891 (-)

Expression


Co-expression Network