G377987


Basic Information

Item Value
gene id G377987
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21022879 ~ 21023351 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU429641
gacaaaacaaagcaggtaaaccatcagctcctttcaaaactgaagtcacagtgactctacaagatggaaagcacagaatctaagcatattatacaaaatgatacatatacagacctttgaatgtgtataacacaccctgcatgtctgcacactaaaataaatgcaggacaaatccatacacatcaactgaacagacaaatgaatggatgcagtagcctccctgcagccttgtattacacacagtataccgcacaaacatcataagaggccaaatttgtcaaaaaacgaacccaaaaaaacccaaattcctctgccaccgcaggacatatttaaccaaaattgaaagcacacatactaactaaaataattcaacacatattggtccctcagcagccgaccactgtcgtcatcagggaagattgccggattgtcccagtccatggctggtggcactctgggggccctctccttcc

Function

NR:

description
putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU429641 True 473 lncRNA 0.42 1 21022879 21023351

Neighbor

gene id symbol gene type direction distance location
LOC110523399 LOC106568557 coding downstream 3913 21007681 ~ 21018966 (-)
LOC110523394 LOC100194676 coding downstream 171655 20843391 ~ 20851224 (-)
LOC110523392 NA coding downstream 971037 20044243 ~ 20051842 (-)
LOC110523381 LOC106568667 coding downstream 1197345 19621025 ~ 19825534 (-)
LOC110523387 LOC106562971 coding downstream 1404810 19590144 ~ 19618069 (-)
LOC110522820 LOC105889199 coding upstream 136930 21160281 ~ 21162494 (-)
LOC110523403 ubb coding upstream 149293 21172644 ~ 21175591 (-)
tpst2 LOC106568446 coding upstream 152797 21176148 ~ 21182983 (-)
LOC110522821 LOC106568453 coding upstream 160336 21183687 ~ 21271783 (-)
LOC110522822 myo18b coding upstream 266815 21290166 ~ 21353241 (-)
G377978 NA non-coding downstream 15577 21006718 ~ 21007302 (-)
G377972 NA non-coding downstream 25746 20996914 ~ 20997133 (-)
G377970 NA non-coding downstream 29240 20993068 ~ 20993639 (-)
G377904 NA non-coding downstream 78851 20943599 ~ 20944028 (-)
G377995 NA non-coding upstream 10546 21033897 ~ 21035828 (-)
G378000 NA non-coding upstream 24874 21048225 ~ 21048524 (-)
G378008 NA non-coding upstream 42154 21065505 ~ 21067811 (-)
G378025 NA non-coding upstream 63376 21086727 ~ 21110446 (-)
G378030 NA non-coding upstream 75497 21098848 ~ 21100271 (-)
G377809 LOC106568602 other downstream 317739 20704613 ~ 20705140 (-)
G377800 NA other downstream 328171 20694096 ~ 20694708 (-)
G374786 NA other downstream 2463712 18558140 ~ 18559167 (-)
G374189 NA other downstream 3019709 18002820 ~ 18003170 (-)
LOC110523354 LOC106569496 other downstream 3501392 17483696 ~ 17521507 (-)
G377991 NA other upstream 6107 21029458 ~ 21029783 (-)
G378359 NA other upstream 768311 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 1153914 22177265 ~ 22179322 (-)
jmy LOC106568093 other upstream 1776349 22799696 ~ 22859199 (-)
LOC110522831 LOC106563032 other upstream 2523849 23488916 ~ 23556681 (-)

Expression


Co-expression Network