XLOC_022902 (sec22c)


Basic Information

Item Value
gene id XLOC_022902
gene name sec22c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20658760 ~ 20675426 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045531
CTGCGCTCAGAATTAAAATATACTTGCACATTTATGTACGGTGTgaatcttatattatattataatcattgcagtaaaaaaaacaaacgagaataaacacacacttaggatttttaaggctgattttagaggacttttattttaaaacaaagacaTCCGTTGACGCTTTTATTTCCCACAATTCAAAGAGACAAACAAAAAGCTCGTAGTCGCGTTTTAAAATCATTAAGTCATAAATAactattttttgttgttattgttattatattttttatgttgtaatactcatgtcattttaaaaattcaTCATTTCACATAATCGATGTGAATGTACTGAACTATTGTAAGGATGTGTTCTCATAGAGCTTCACGAGGAGCATGTCACTGATCCTGTTTGCTTTTGTGGTCCGGGTCAGGGACGGACTCCCTCTCTCCGCCTCCACTGATTTCCTGCATAACAAGGAACTTCAGGAGAAAAAGCAACAGATTAAAATCATCTCGAAATCCTTGAATGTCTTACCAGAGAGAGGGACAGTCAAGGGCCATGAGCTCAACATTCACTTCCTCTCATGTGAGGGTGTGTCCTACATGAGCGTATGTGCCTGCACGCTCCCTGCTGCCACGGCCTTCTGCTTTTTGGAGGACCTGCGCTGGGAATTCACAGCATGCTTTGACAACTCTGCAGTGGCCATGGCAAACAGGCCGTACCCATTTCTGGAGTTTGATAGTGCCATTCAAAAACTTCAGCAGCATTATAACCAGAAAGGGGGTCCGTCTCTGGAGGTGACCCTGGCTGAAGTGCAGGAAGACCTCCGAAGCAGCCCCCCTCAGGTTCTCACCATGGAGGACGTGGTTCTCAGCAATGGAGCTGCTAATGGACATGTGGAGCAAACAACTGCATCAGGCCAGAGTCAGAGATTGGAGCCAGTCTCTGCACCCGGAATCCTCTCACTGGTTCTTAACATCATGTGTGCTGCGCTCAACCTTATTCGTGGTGTTCATCTTATCGAATACACCTTCCAGgaTGATTATGATGGTTTGTGGAATGTGGTGGCATTTCTTGTGGCATTTCTCTGCTGCGTTTGCCAGTGTCATCTGTACTTGTTCCACACCTGCCAGAAGAGGCTGAAATCCTTCACTCTCCTGACTCTCATCGTCTTATGCAATGCTTTTCTCTTCGGCCCAAGGAACATCTGGCAGCTGGTCTTCCACCTGTCCGTGGCCTGTCTCTCCACACTGCTCACCCTACACCGCAAACTGCAGGACAGAAACACGGACTGTGGAGTATGAGGACTTCAGCCAGCTCTGGGCCTCACAATTTTGGATTGAAAGGAGCCTCTACGGCAAACAAAAGAGCCACAGGAATCATGTCCGGTACTGTACTATCTCCATCATTTTTTACAATGCTCTTTGTCCTGATATATCATTGTCCTCTCAGTGAAAACGAGACACCCCAGAGACCTTTTGTTCTGTTTGGAACATGAAACAGAAAGTCTGTTAATTGAGGCAGTTCTTTGGCAGCATCTATTTAaaccaaataatatatatataatcagattgttgttttttttacgtGTTTTGCATTGATTAAATCGTATGTGTGAGCTGACATTTAATAAAGTCTTAGCTCGTAGCTATGCTCAATGATTTATTGAATGGTAATCATTTCAAACATTGTTAAATGAATAGTTCTGAC
>TCONS_00045532
TCAAAGAGACAAACAAAAAGCTCGTAGTCGCGTTTTAAAATCATTAAGTCATAAATAactattttttgttgttattgttattatattttttatgttgtaatactcatgtcattttaaaaattcaTCATTTCACATAATCGATGTGAATGTACTGAACTATTGTAAGGATGTGTTCTCATAGAGCTTCACGAGGAGCATGTCACTGATCCTGTTTGCTTTTGTGGTCCGGGTCAGGGACGGACTCCCTCTCTCCGCCTCCACTGATTTCCTGCATAACAAGGAACTTCAGGAGAAAAAGCAACAGATTAAAATCATCTCGAAATCCTTGAATGTCTTACCAGAGAGAGGGACAGTCAAGGGCCATGAGCTCAACATTCACTTCCTCTCATGTGAGGGTGTGTCCTACATGAGCGTATGTGCCTGCACGCTCCCTGCTGCCACGGCCTTCTGCTTTTTGGAGGACCTGCGCTGGGAATTCACAGCATGCTTTGACAACTCTGCAGTGGCCATGGCAAACAGGCCGTACCCATTTCTGGAGTTTGATAGTGCCATTCAAAAACTTCAGCAGCATTATAACCAGAAAGGGGGTCCGTCTCTGGAGGTGACCCTGGCTGAAGTGCAGGAAGACCTCCGAAGCAGCCCCCCTCAGGTTCTCACCATGGAGGACGTGGTTCTCAGCAATGGAGCTGCTAATGGACATGTGGAGCAAACAACTGCATCAGGCCAGAGTCAGAGATTGGAGCCAGTCTCTGCACCCGGAATCCTCTCACTGGTTCTTAACATCATGTGTGCTGCGCTCAACCTTATTCGTGGTGTTCATCTTATCGAATACACCTTCCAGgaTGATTATGATGGTTTGTGGAATGTGGTGGCATTTCTTGTGGCATTTCTCTGCTGCGTTTGCCAGTGTCATCTGTACTTGTTCCACACCTGCCAGAAGAGGCTGAAATCCTTCACTCTCCTGACTCTCATCGTCTTATGCAATGCTTTTCTCTTCGGCCCAAGGAACATCTGGCAGCTGGTCTTCCACCTGTCCGTGGCCTGTCTCTCCACACTGCTCACCCTACACCGCAAACTGCAGGACAGAAACACGGACTGTGGAGTATGA

Function

symbol description
sec22c Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SEC22C (SEC22 homolog C, vesicle trafficking protein).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060227-2 Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SEC22C (SEC22 homolog C, vesicle trafficking protein).

Ensembl:

ensembl_id ENSDARG00000063387

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045531 False 1696 mRNA 0.43 8 20658760 20675426
TCONS_00045532 True 1108 mRNA 0.47 7 20658942 20666194

Neighbor

gene id symbol gene type direction distance location
XLOC_022901 klhl40b coding upstream 77088 20575259 ~ 20581672 (+)
XLOC_022900 hhatlb coding upstream 86590 20559009 ~ 20572170 (+)
XLOC_022899 gars1 coding upstream 103791 20536056 ~ 20554969 (+)
XLOC_022898 plcd1a coding upstream 239506 20372497 ~ 20419254 (+)
XLOC_022897 acaa1 coding upstream 326300 20325312 ~ 20332460 (+)
XLOC_022903 CR931724.1 coding downstream 112742 20788168 ~ 20788284 (+)
XLOC_022904 NA coding downstream 241319 20916745 ~ 20918412 (+)
XLOC_022905 cst14a.2 coding downstream 245137 20920563 ~ 20921714 (+)
XLOC_022906 fam162a coding downstream 251709 20927135 ~ 20934666 (+)
XLOC_022907 si:ch211-161h7.8 coding downstream 284790 20960216 ~ 20964379 (+)
XLOC_022896 NA non-coding upstream 581464 20060772 ~ 20077296 (+)
XLOC_022895 NA non-coding upstream 603802 20054470 ~ 20054958 (+)
XLOC_022892 NA non-coding upstream 943536 19704715 ~ 19715224 (+)
XLOC_022891 NA non-coding upstream 961314 19591878 ~ 19697446 (+)
XLOC_022887 NA non-coding upstream 1779780 18876733 ~ 18878980 (+)
XLOC_022912 CU915780.1 non-coding downstream 597186 21272612 ~ 21272728 (+)
XLOC_022913 NA non-coding downstream 632141 21307567 ~ 21308014 (+)
XLOC_022915 AL929009.1 non-coding downstream 826433 21501859 ~ 21502569 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04084765_04090616 SEC22C coding CI01000018 null 4084564 ~ 4091161 (+)