XLOC_023376


Basic Information

Item Value
gene id XLOC_023376
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17124410 ~ 17126986 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047170
GTGCTTTATTGTTTTGAGCAATGCTTATGGAATGGAGTGTATATCGTTTTACATCATAACACATGAGACAGCCTCCCCTTTGGTTACTCTCAAGATTTTAGACTCATTTCTGTGAGTGTGATGATGCAGCGCTTCCCCTTCACTCCTGTTACCTTCCCCATTTAGATAGAGTCACAGACGATGTGATTGTTCTTTATTTGTTTCGACACGCGTGTAAACCTGCATATCCAAAACACAACCCATCCGCTAGCGATATTCGTAAATGTTTAGAAAGTAAAAATCGAATTGCTAAAAAGTACATTACATTTTTCCCAAAGCTTACGCGATGAGTTATCCATCAGCGAACACATTGAGCAAAGAATGCTTTTGGCAAACGAAGAACAAAGTGGAGGGCTTTCTGAGAAGGCGTGAAGCTGTATCTGACTGTAGCACTTTTCACATTAAGTGAAATTCACATATATATCTCTGCGTGTGGATCCAGTATCAGAAGCTGAAGCGATGCTCTGACGACACTATCAAAGTCTTGATGCTAAAACAGCCTCTTTTGTCATGCCCAAGTTTatgagatttgttttttttttctgttgtgatTAATACAACCAAGAAGACCAGGGTTTGTTTTCTTCCCAATGAGAACAATAAAAAGGGTTATTTTTCCCCCACTGTGCAATGGCTTCCCAAGGGCACAAGCAGCGCTCAGTTTATTAAGAAAATGAAACACTAACCAAGGACGCCGTAACATTGGTGCCGTATAATACTTCCAGATAAAAATGCGTCGAGAAAGCCTGAACACAATTTACAATTAACACTATAACAAGAGCCACACCTACTCATATCAACAAATTCACAATGCACACTCTTGTCCAAAAGGCTTTGCACATAGAATTAGCCAGTCAAGGAGAAATTGTGACCATTTTCAGTGCTGCTGTGTTGTGAACAGAACGTGTAATGTCTTGTGTCCCGTTTGAAGCAACAGCATCAGAAGAAACATCAAAACatcagaggagaaaaaaaaacgaaaaaaaaaaaacactgaaaatatcaGGATTATTTTTTCAACCACCcctaaatattagaaaataacattttacttctgtttgaaaaaaaagattaaaaaatacagAATTAAATAATTTGGAGTAAAAAGGCACGACTCTTGCACAGTGTATACATTGAAAACACAGTATAAAGCAGGTATGGAAccatcttaaaaaacaaaaatagaccTGGGGTTGGGGATTAGGGCAAGGGGCGGAAAAGCATGGAATATAGACCATCTCTGGACACGTCCAGACTGAATACTAAAATAATGCAACATgcatttttcctctttttcattTGTAGACAGTACTTGtgctgaatgaattaaaatagtaACATTCTTCATTTCTCAGAACACTTTGAGCGAATCACAGAGTGGTGCTTAATTAAAATTGAATGTAAAATATGTGCAAGTGACCAACAGAAACACGAGGCGTTTTCTCTCTTTCAATTAGAAAAGTTAAGAAACAAATGTTAATCTCTAAGTCATATTACCTGCTTCTAATTCAATGCCGTTTACAAAAGTATTCTCCTGTTACATGTATTAAATTTCCCTTGTAAATACCACTGCAGAACCAACAAACTCCGTGAACATTTTGGTTCCATTCATCATGTGCAAAATCAGTTCATCTTTTGCTGCCAATTTGAACGTTCAAAAGAACTGCGAACAAAAGACACACACAAATTCAAACACAACCAATGttttaaaaagacagaaaaaaaaatacacaaagcaCCCCTTCCCCAAACCTCAATGGAATACTGAAACACAACTAAACGGTGTGTCCTGGTACGATGCGAGAGGTAAACTATGTTTTGTCTGCTGAGAACAAGCGTATGCGCGAGAACACGTGAAATGGCAAGGCTGCGTTGAACAGTGCCTCATAGTGCTATCGTTGCAGCTCGTAACAGACCGAGTGATCCTAAGAAAAAGTGCAACAGTTTAAGGTGCTGATGGCAACTGAATCACTAATGTAACAGAATTCACTGATGACCAAAGCAAAAGCACTGATCGATCCTGCTGCCTCAGTGTCTTCATTCTCCCTCCTGTCAAGTTGCTGcagaaccaaacaaacaaacaaaaataataaacacaaaaaaactaaatacctaCCAGAACCTTCGCCTCAGAACACTGAAGGAACATGCATAACAGATTCATGTCTGTCCACACAAGGCAAGAAAAATATCAAAttggaacaaacaaaaaaatgagaaTAAGG

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043069 negative regulation of programmed cell death biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060548 negative regulation of cell death biological_process

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047170 True 2264 lncRNA 0.38 2 17124410 17126986

Neighbor

gene id symbol gene type direction distance location
XLOC_023375 msrb2 coding downstream 57126 17040211 ~ 17067284 (-)
XLOC_023374 c8g coding downstream 84772 17031129 ~ 17039638 (-)
XLOC_023373 ptgdsb.1 coding downstream 95036 17027310 ~ 17029374 (-)
XLOC_023372 ptgdsb.2 coding downstream 101018 17021513 ~ 17023392 (-)
XLOC_023371 klhl15 coding downstream 144073 16962969 ~ 16980337 (-)
XLOC_023377 CR376737.1 coding upstream 9763 17136749 ~ 17139114 (-)
XLOC_023378 NA coding upstream 106540 17233526 ~ 17236200 (-)
XLOC_023379 cul1b coding upstream 237759 17364745 ~ 17400472 (-)
XLOC_023380 NA coding upstream 276484 17403470 ~ 17406483 (-)
XLOC_023381 NA coding upstream 282322 17409308 ~ 17413946 (-)
XLOC_023665 dre-mir-735 misc upstream 21050975 38177961 ~ 38178027 (-)
XLOC_023368 CR354550.1 non-coding downstream 569427 16554869 ~ 16554983 (-)
XLOC_023367 NA non-coding downstream 901624 16204788 ~ 16222786 (-)
XLOC_023366 NA non-coding downstream 976892 16146503 ~ 16147518 (-)
XLOC_023365 CU207257.1 non-coding downstream 1049295 16074089 ~ 16075115 (-)
XLOC_023364 NA non-coding downstream 1374996 15745070 ~ 15749414 (-)
XLOC_023383 CR376742.1 non-coding upstream 419767 17546753 ~ 17546869 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G346960 NA non-coding NC_048568.1 CM023222.3 35503970 ~ 35504206 (+)
striped catfish (Pangasianodon hypophthalmus) G331468 NA non-coding NC_047616.1 CM018562.1 13287447 ~ 13290399 (+)