XLOC_023644 (CU469584.1)


Basic Information

Item Value
gene id XLOC_023644
gene name CU469584.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 37361189 ~ 37404466 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046677
aaatattattattgttatgtacCATATGCTTGagaatttacaaaattaaaaacctcctcatattaacctttattttagatCTACAAAATCGTGATCtagattttaagcaaaaaaaaaaaattgtgattctcattttagccagaaatGTGCAGCCTTATTTCAGATGATTCATAATTAGGAAAATATTTGGCCAAGATGCAACAGCTTGAATATCTggaatctctctctttctccagcGCTCATCGTGTCCTCTTTTCTTCCCTTTTGTCAGCATTCTGTTTTCCTCGTCATGTACCTGACTCGACGAAGCAGTCAAATCTTTGTAAATTTTTGAAGAGCGCTGAGGTCTGCTGCAGCTCAGGGGAATAAAGCGCTGACCCAGAATCAGTAGTGAcgtcctcatcatcatcatgagtGCTGACAGCAGCCTGCGCTCGGCCGACAGCcactacaacaacaacagcagcagcagtagcAAATGAAGGAGAACACGACCTTAAAACGACCTCTCCGAACCCCTGCTGTCCTGACCGACACTCAAATGAGTCCTGAACTCACCTGCCGGCGCCCTGCTGTCTCTCGCCCTCATGTTCCTGCATCCAAACGCCACGTCCGATCCGACAGCACTGCCTAGAGATTCATTGCAGAG
>TCONS_00046678
CATGGATTGGCAATTTTTCATCATCTTCACAGTTTAATTCTGTTGGCCATTTCCCACTGATAAGAAAACGATGATTAAAGACTTTATCTGCACCAGCTGTTGTGCCGGTTTAATGGCAGTTTCAGACCTGATGGCGGGACATCTGGACCCTGATGGGGCTGTTGATCTATGTGTGAGGAATTGGACTGGAAGAACTGTCTCTCTCCCACAATCCTCGGCGTTGTTTCTCCATATGGTTCCCGCAGGATCCTGACAGCCACATTACGGAGCATTGTACAGTATTCCTGTATCCATTTCCACAtaagaaagaaagtcatacagctttggaatgacatgagCATTCTGTTTTCCTCGTCATGTACCTGACTCGACGAAGCAGTCAAATCTTTGTAAATTTTTGAAGAGCGCTGAGGTCTGCTGCAGCTCAGGGGAATAAAGCGCTGACCCAGAATCAGTAGTGAcgtcctcatcatcatcatgagtGCTGACAGCAGCCTGCGCTCGGCCGACAGCcactacaacaacaacagcagcagcagtagcAAATGAAGGAGAACACGACCTTAAAACGACCTCTCCGAACCCCTGCTGTCCTGACCGACACTCAAATGAGCGGTGAATTGGGCTGAGGGGAATCTGAGGGCATGCATTTTCTTCCTTTTTAATTCTGTGAGCCTCTACACACTGGATGGTGGATTTGGAATGACAGGAAAAGCCATTTTTGTAATTGCGATGGAAATTCACATTTGCCCAACACTGCTTAATGACAATTAAATCCATTTTGAATACTAAATTTAGGAAAATGCTATATGTTTTCCcaagaatatttatatatttgaaaaaatttcccaagtgatgtttaaagattttttcaacacacatctaaatata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095214

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046677 False 649 processed_transcript 0.44 2 37361189 37367348
TCONS_00046678 True 891 processed_transcript 0.43 6 37366431 37404466

Neighbor

gene id symbol gene type direction distance location
XLOC_023643 tsr3 coding downstream 22450 37329119 ~ 37338739 (-)
XLOC_023642 pdpk1b coding downstream 34953 37301852 ~ 37326236 (-)
XLOC_023641 NA coding downstream 66088 37289468 ~ 37295101 (-)
XLOC_023640 CABZ01055522.1 coding downstream 73397 37274759 ~ 37287792 (-)
XLOC_023639 ube2ib coding downstream 89073 37257596 ~ 37272116 (-)
XLOC_023645 cluap1 coding upstream 62304 37466770 ~ 37484123 (-)
XLOC_023646 h1-0 coding upstream 162563 37567029 ~ 37568359 (-)
XLOC_023647 zgc:112496 coding upstream 227166 37631632 ~ 37640705 (-)
XLOC_023648 anks3 coding upstream 256674 37661140 ~ 37680917 (-)
XLOC_023649 zgc:112185 coding upstream 276616 37681082 ~ 37688398 (-)
XLOC_023665 dre-mir-735 misc upstream 773495 38177961 ~ 38178027 (-)
XLOC_023637 NA non-coding downstream 190265 37170317 ~ 37170924 (-)
XLOC_023636 NA non-coding downstream 284372 37069683 ~ 37076817 (-)
XLOC_023635 NA non-coding downstream 311278 37046594 ~ 37049911 (-)
XLOC_023632 NA non-coding downstream 482062 36872875 ~ 36879127 (-)
XLOC_023651 NA non-coding upstream 301160 37705626 ~ 37708051 (-)
XLOC_023652 NA non-coding upstream 320508 37724974 ~ 37726949 (-)
XLOC_023658 BX001030.2 non-coding upstream 680851 38085317 ~ 38092588 (-)
XLOC_023660 BX001030.1 non-coding upstream 694430 38098896 ~ 38099675 (-)
XLOC_023667 NA non-coding upstream 793372 38197838 ~ 38215482 (-)

Expression


Co-expression Network