XLOC_024309 (si:ch211-113a14.12)


Basic Information

Item Value
gene id XLOC_024309
gene name si:ch211-113a14.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 36327034 ~ 36327904 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048122
ATTGATCTCACAAACTGTGTTGAGGTGTGACTACATCCGCTCAGAGAACCATGGCTGAAACCGCTCCTGCTGCCCCGCCAGCTAAAGCTCCTAAGAAGAAAGCGGCTTCTAAGCCCAAGAAAGCGGGTCCAAATGTCCGCGATCTCATCGTCAAGACTGTGACCGCTTCCAAGGAGAGACACGGCGTGTCCCTCGCAGCCCTGAAGAAAGCTCTCTCTGCTGGCGGCTACGATGTGGAGAAGAACAATTCCCGCGTCAAAATTGCCGTCAAGGCCTTGGTGACTAACGGCACCCTGGTCCAGACTAAAGGCACAGGCGCCTCAGGTTCCTTCAAGCTGAACAAGAAGCAAGCCGAGCCCAAGAAGAAGCCAGCGGCCAAGAAAACTGCAGTAAAAGCCAAGAAACCCGCAGCAAAGAAACCCGCCGCTAAGTCACCCAAGAAGGTGAAGAAACCGACCGCCGCGAAGAAGGCCACAAAGAGCCCCAAGAAAGCCAAGAAGCCTGCAGCTGCTAAGAAAGCAACAAAAAGCCCGAAGAAAGCGAAGAAGCCAGCGGCTGCCAAGAAAGCAACCAAGAGCCCTAAGAAGGTTGCTAAACCCAAGACGGTGAAGCCAAAGGCGGCCAAGCCTAAGAAGGCCGCTCCCAAGAAGAAGTAAATCTGTTTTACCCGTCGCAACAaaaaggctcttttaagagccacccacTGATTACAACAAAAGTGCAACATTATACAATCCTCATGGAAAGTGACGCCAGTTTGTCTCTTGGTATTTCCAGGAGCGACCAGTGATTTTTTTCCTAAATATTGAACAATTATGGGCATAACATGGGTTATGGGTATCTATTACGTGCAATATATAAACGTATTACT

Function

symbol description
si:ch211-113a14.12 Predicted to enable double-stranded DNA binding activity and nucleosomal DNA binding activity. Predicted to be involved in DNA packaging and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within nucleosome assembly. Predicted to be located in chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000077456

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048122 True 871 mRNA 0.50 1 36327034 36327904

Neighbor

gene id symbol gene type direction distance location
XLOC_024308 hist1h4l coding upstream 930 36325793 ~ 36326104 (+)
XLOC_024307 si:ch211-113a14.11 coding upstream 4259 36316280 ~ 36322775 (+)
XLOC_024306 hist1h4l coding upstream 11596 36315127 ~ 36315438 (+)
XLOC_024305 CR354435.2 coding upstream 14165 36312459 ~ 36312869 (+)
XLOC_024304 hist1h2a3 coding upstream 15315 36311333 ~ 36311719 (+)
XLOC_024310 hist1h2a4 coding downstream 620 36328524 ~ 36329005 (+)
XLOC_024311 zgc:173552 coding downstream 1719 36329623 ~ 36330033 (+)
XLOC_024312 hist1h4l coding downstream 4878 36332782 ~ 36333093 (+)
XLOC_024313 zgc:171759 coding downstream 6089 36333993 ~ 36334367 (+)
XLOC_024314 hist1h2a1 coding downstream 9016 36336920 ~ 36337306 (+)
XLOC_023973 CR762411.1 misc upstream 21108925 15217824 ~ 15218109 (+)
XLOC_024301 NA non-coding upstream 53447 36269642 ~ 36273587 (+)
XLOC_024299 CABZ01089081.1 non-coding upstream 226325 36096364 ~ 36100709 (+)
XLOC_024296 NA non-coding upstream 311598 35988910 ~ 36015436 (+)
XLOC_024297 NA non-coding upstream 311872 36011421 ~ 36015162 (+)
XLOC_024292 BX957352.1 non-coding upstream 445503 35881415 ~ 35881531 (+)
XLOC_024323 NA non-coding downstream 48232 36376136 ~ 36383338 (+)
XLOC_024324 NA non-coding downstream 70608 36398512 ~ 36404040 (+)
XLOC_024326 NA non-coding downstream 120680 36448584 ~ 36451721 (+)
XLOC_024327 FO904923.1 non-coding downstream 128896 36456800 ~ 36456918 (+)
XLOC_024328 CABZ01088576.1 non-coding downstream 181770 36509674 ~ 36509789 (+)

Expression


Co-expression Network