RNA id: TCONS_00048122



Basic Information


Item Value
RNA id TCONS_00048122
length 871
RNA type mRNA
GC content 0.50
exon number 1
gene id XLOC_024309
representative True

Chromosome Information


Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 36327034 ~ 36327904 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATTGATCTCACAAACTGTGTTGAGGTGTGACTACATCCGCTCAGAGAACCATGGCTGAAACCGCTCCTGCTGCCCCGCCAGCTAAAGCTCCTAAGAAGAAAGCGGCTTCTAAGCCCAAGAAAGCGGGTCCAAATGTCCGCGATCTCATCGTCAAGACTGTGACCGCTTCCAAGGAGAGACACGGCGTGTCCCTCGCAGCCCTGAAGAAAGCTCTCTCTGCTGGCGGCTACGATGTGGAGAAGAACAATTCCCGCGTCAAAATTGCCGTCAAGGCCTTGGTGACTAACGGCACCCTGGTCCAGACTAAAGGCACAGGCGCCTCAGGTTCCTTCAAGCTGAACAAGAAGCAAGCCGAGCCCAAGAAGAAGCCAGCGGCCAAGAAAACTGCAGTAAAAGCCAAGAAACCCGCAGCAAAGAAACCCGCCGCTAAGTCACCCAAGAAGGTGAAGAAACCGACCGCCGCGAAGAAGGCCACAAAGAGCCCCAAGAAAGCCAAGAAGCCTGCAGCTGCTAAGAAAGCAACAAAAAGCCCGAAGAAAGCGAAGAAGCCAGCGGCTGCCAAGAAAGCAACCAAGAGCCCTAAGAAGGTTGCTAAACCCAAGACGGTGAAGCCAAAGGCGGCCAAGCCTAAGAAGGCCGCTCCCAAGAAGAAGTAAATCTGTTTTACCCGTCGCAACAaaaaggctcttttaagagccacccacTGATTACAACAAAAGTGCAACATTATACAATCCTCATGGAAAGTGACGCCAGTTTGTCTCTTGGTATTTCCAGGAGCGACCAGTGATTTTTTTCCTAAATATTGAACAATTATGGGCATAACATGGGTTATGGGTATCTATTACGTGCAATATATAAACGTATTACT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000073452

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00048116 lncRNA upstream 24008 36300651 ~ 36303026 (+) True XLOC_024303
TCONS_00049287 lncRNA upstream 53447 36269642 ~ 36273587 (+) True XLOC_024301
TCONS_00048111 lncRNA upstream 226325 36096364 ~ 36100709 (+) True XLOC_024299
TCONS_00049285 lncRNA upstream 311598 35988910 ~ 36015436 (+) True XLOC_024296
TCONS_00049288 lncRNA downstream 48232 36376136 ~ 36383338 (+) True XLOC_024323
TCONS_00049289 lncRNA downstream 70608 36398512 ~ 36404040 (+) True XLOC_024324
TCONS_00048138 lncRNA downstream 90873 36418777 ~ 36421945 (+) True XLOC_024325
TCONS_00049290 lncRNA downstream 120680 36448584 ~ 36451721 (+) False XLOC_024326
TCONS_00049291 lncRNA downstream 121050 36448954 ~ 36451721 (+) False XLOC_024326
TCONS_00048121 mRNA upstream 930 36325793 ~ 36326104 (+) True XLOC_024308
TCONS_00048120 mRNA upstream 4259 36316280 ~ 36322775 (+) True XLOC_024307
TCONS_00048119 mRNA upstream 11596 36315127 ~ 36315438 (+) True XLOC_024306
TCONS_00048118 mRNA upstream 14165 36312459 ~ 36312869 (+) True XLOC_024305
TCONS_00048117 mRNA upstream 15315 36311333 ~ 36311719 (+) True XLOC_024304
TCONS_00048123 mRNA downstream 620 36328524 ~ 36329005 (+) True XLOC_024310
TCONS_00048124 mRNA downstream 1719 36329623 ~ 36330033 (+) True XLOC_024311
TCONS_00048125 mRNA downstream 4878 36332782 ~ 36333093 (+) True XLOC_024312
TCONS_00048126 mRNA downstream 6089 36333993 ~ 36334367 (+) True XLOC_024313
TCONS_00048127 mRNA downstream 9016 36336920 ~ 36337306 (+) True XLOC_024314
TCONS_00048100 other upstream 445503 35881415 ~ 35881531 (+) True XLOC_024292
TCONS_00048053 other upstream 1535568 34791362 ~ 34791466 (+) True XLOC_024254
TCONS_00048052 other upstream 1537415 34775558 ~ 34789619 (+) True XLOC_024253
TCONS_00048029 other upstream 2546406 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048028 other upstream 2597636 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048139 other downstream 128896 36456800 ~ 36456918 (+) True XLOC_024327
TCONS_00048140 other downstream 181770 36509674 ~ 36509789 (+) True XLOC_024328
TCONS_00048142 other downstream 516223 36844127 ~ 36844249 (+) True XLOC_024331
TCONS_00048157 other downstream 1038794 37366698 ~ 37366955 (+) False XLOC_024341
TCONS_00048162 other downstream 1107457 37435361 ~ 37439792 (+) False XLOC_024342

Expression Profile


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