XLOC_026569 (ighv4-2)


Basic Information

Item Value
gene id XLOC_026569
gene name ighv4-2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34113410 ~ 34113838 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051755
ATGAGGAAATTAactttattattacttttgttcAATCTAAATGGTTTATACTGTCAAGGCATGGATTCGATTGAAAGCTCAGTTCAGAAAAAGCCTGGAGAAACTCTGACTCTGTCCTGTAGAGGATCCGGGTTCAGCTTTGACTGCTGTAGCATGCACTGGATCAGACAACAAGCTGGAAAACCTCTTGTGTGGATGGGTCTGGGATACAGTTCTGGAAATGGGCATAAGGCAGAATCCTTTAAGGAGAGGCTGGAAATCAGCAGAGATGATTCAAAAAGCATGATGTATATGAAACTGTCTGGACTGACAGAGGAGGACTCGGCTGTGTATTACTGTGCAAAACAAG

Function

symbol description
ighv4-2 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-8 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000096275

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051755 True 349 mRNA 0.42 2 34113410 34113838

Neighbor

gene id symbol gene type direction distance location
XLOC_026568 ighv4-3 coding downstream 5725 34107197 ~ 34107685 (-)
XLOC_026567 ighv5-1 coding downstream 6939 34106046 ~ 34106471 (-)
XLOC_026563 ighv6-1 coding downstream 10045 34095514 ~ 34103365 (-)
XLOC_026570 ighv4-1 coding upstream 1600 34115438 ~ 34115886 (-)
XLOC_026571 clpp coding upstream 15667 34129505 ~ 34136778 (-)
XLOC_026572 NA coding upstream 25799 34139637 ~ 34141181 (-)
XLOC_026573 yipf2 coding upstream 60166 34174004 ~ 34180464 (-)
XLOC_026574 tnrc6c1 coding upstream 144917 34258755 ~ 34337969 (-)
XLOC_026558 BX649502.11 non-coding downstream 26927 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 48474 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 54693 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 64757 34048205 ~ 34048653 (-)
XLOC_026538 BX649502.6 non-coding downstream 65794 34047179 ~ 34047616 (-)
XLOC_026580 NA non-coding upstream 527210 34641048 ~ 34641973 (-)
XLOC_026585 NA non-coding upstream 833564 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 1451290 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 2206401 36320239 ~ 36323625 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_04983344_04983640 IGHV4-2 coding CI01000069 null 4983322 ~ 4983640 (-)