XLOC_026570 (ighv4-1)


Basic Information

Item Value
gene id XLOC_026570
gene name ighv4-1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34115438 ~ 34115886 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051756
ATGCACAACAATCTGCTCTACCTGCTGTTTTCATTGGCCTTAACGAAAGTAGTGAGAGGTCAGAATATGGAGTCCATTTCATCTGAGTCAGTGTTAAAGCCTGGAGAAACTCTGAGTCTTTCCTGTAGGGGATCAGGATTTACCTTCGGAAGCAACAACATGCACTGGATTAGACAGCAACCTGGGAAAGCACTGATGTGGATGGGTCGTGTCTGGTATAATGCACAAGGACATGACTATGCTAATAGTTTTAAGGGACGGATAGAAATTACCAGAGACAATTCAAAAAGCATGGTGTATCTGAAACTGTCTGCACTGACAGAAGAGGACTctgctgtgtattactgtgcAAGAGAAG

Function

symbol description
ighv4-1 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-6 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000096259

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051756 True 358 mRNA 0.44 2 34115438 34115886

Neighbor

gene id symbol gene type direction distance location
XLOC_026569 ighv4-2 coding downstream 1600 34113410 ~ 34113838 (-)
XLOC_026568 ighv4-3 coding downstream 7753 34107197 ~ 34107685 (-)
XLOC_026567 ighv5-1 coding downstream 8967 34106046 ~ 34106471 (-)
XLOC_026566 ighv5-2 coding downstream 13363 34101631 ~ 34102075 (-)
XLOC_026565 ighv5-3 coding downstream 16707 34098259 ~ 34098731 (-)
XLOC_026571 clpp coding upstream 13619 34129505 ~ 34136778 (-)
XLOC_026572 NA coding upstream 23751 34139637 ~ 34141181 (-)
XLOC_026573 yipf2 coding upstream 58118 34174004 ~ 34180464 (-)
XLOC_026574 tnrc6c1 coding upstream 142869 34258755 ~ 34337969 (-)
XLOC_026575 sept9a coding upstream 336450 34452336 ~ 34586403 (-)
XLOC_026558 BX649502.11 non-coding downstream 28955 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 50502 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 56721 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 66785 34048205 ~ 34048653 (-)
XLOC_026538 BX649502.6 non-coding downstream 67822 34047179 ~ 34047616 (-)
XLOC_026580 NA non-coding upstream 525162 34641048 ~ 34641973 (-)
XLOC_026585 NA non-coding upstream 831516 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 1449242 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 2204353 36320239 ~ 36323625 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1185530 NA unknown NC_048577.1 CM023231.2 51830790 ~ 51847380 (+)
eurasian perch (Perca fluviatilis) G153574 NA unknown NC_053126.1 CM020923.1 9654323 ~ 9678388 (-)
mexican tetra (Astyanax mexicanus) LOC111190669 NA non-coding NW_019172687.1 APWO02002285.1 55632 ~ 56292 (-)