LOC110538363 (LOC106601232)


Basic Information

Item Value
gene id LOC110538363
gene name LOC106601232
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75728122 ~ 75735536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625133.2
TCCTGGCTATTGTCCTGTTCTCACTAACTCCGCTGAGCGATCGGAGGTGTCCCTATTATTTAACATCCAATAGTGACCGCAGTCCTTTTCAGACTGACTGGTAATTTACTGCTAAAAAACACAGAATCCAGAATTAAATACTGTGGCTTTGGACTTTCTATTTTTATCTACTGGTTTGCCGTTCACTCCTGTGATCTCATCGCCAGCCGCCAGAGTCCCCTCCAGAGCAGCAGGGGTGTTGTCAAAGACCTGAGAGATCCCAGTTACAGGGCCCCTTTCGCCACCAGTGACAACATGGCAATGCCAATGGAACTTGAGCTGAAGCATGTGGAGCTGAGAGCTGGAGACCAGTTGAAAGTACAGGGGAGGATTATGGATGAGGCTGAGAGGGTTTCTGGATTTCCCATATCCAGGTTCCAGATCGACCTGGGCTGTGATGAAGATGACCTGGCACTGCACTTTAACCCACGCTTCAATGATGACACTGATGGTACTGTGCTCGTGTGCAACTCAAAGATTGCCGGCTGCTGGGgtgatgagaagagagagatccACAATCCACTCCAAAGGGGTTCTACATTCAAGATTGTGCTGAAGCTGACGGGCGACATGTTTGAAGTGGAGATGCCTGATGGACAGGAGATCCAGTTCCCCAATCGTGAAGGCCTACATGTCATTACCTACATTCGTATCAAAGGAGACCTCAAACTTACTTCTTTCAAAATCTACTAGACCCCAATATATGAGGGGTGATTTAGTTAGATCAATGGGTGAGGACAGGAGCAATGACACTCATCAAATCATTGTTCTAATATATGTATTAGTGAACTGTTGGGCATATTAAATATGTATCTGGGTTGACCACAGTCTATCACTGTTTATCTTTTTTTCCCCATAGTATGGTATATTTGTTGCAATAATATTCACAATCTCACATACACTAAACTCAAGGGTAATATGAAGATGAGGTTATGGAACTATTTGCCCTGGAATTTTAGGTCATAA
>XM_036938452.1
TCCTGGCTATTGTCCTGTTCTCACTAACTCCGCTGAGCGATCGGAGGTGTCCCTATTATTTAACATCCAATAGTGACCGCAGTCCTTTTCAGACTGACTGGTAATTTACTGCTAAAAAACACAGAATCCAGAATTAAATACTGTGGCTTTGGACTTTCTATTTTTATCTACTGGTTTGCCGTTCACTCCTGTGATCTCATCGCCAGCCGCCAGAGTCCCCTCCAGAGCAGCAGGGGTGTTGTCAAAGACCTGAGAGATCCCAGTTACAGTCCGTCCGTCTTGCAACTCAAACCACATTCAGGGCCCCTTTCGCCACCAGTGACAACATGGCAATGCCAATGGAACTTGAGCTGAAGCATGTGGAGCTGAGAGCTGGAGACCAGTTGAAAGTACAGGGGAGGATTATGGATGAGGCTGAGAGGGTTTCTGGATTTCCCATATCCAGGTTCCAGATCGACCTGGGCTGTGATGAAGATGACCTGGCACTGCACTTTAACCCACGCTTCAATGATGACACTGATGGTACTGTGCTCGTGTGCAACTCAAAGATTGCCGGCTGCTGGGgtgatgagaagagagagatccACAATCCACTCCAAAGGGGTTCTACATTCAAGATTGTGCTGAAGCTGACGGGCGACATGTTTGAAGTGGAGATGCCTGATGGACAGGAGATCCAGTTCCCCAATCGTGAAGGCCTACATGTCATTACCTACATTCGTATCAAAGGAGACCTCAAACTTACTTCTTTCAAAATCTACTAGACCCCAATATATGAGGGGTGATTTAGTTAGATCAATGGGTGAGGACAGGAGCAATGACACTCATCAAATCATTGTTCTAATATATGTATTAGTGAACTGTTGGGCATATTAAATATGTATCTGGGTTGACCACAGTCTATCACTGTTTATCTTTTTTTCCCCATAGTATGGTATATTTGTTGCAATAATATTCACAATCTCACATACACTAAACTCAAGGGTAATATGAAGATGAGGTTATGGAACTATTTGCCCTGGAATTTTAGGTCATAA
>XM_036938450.1
CTGGCTATTGTCCTGTTCTCACTAACTCCGCTGAGCGATCGGAGGTGTCCCTATTATTTAACATCCAATAGTGACCGCAGTCCTTTTCAGACTGACTGGTAATTTACTGCTAAAAAACACAGAATCCAGAATTAAATACTGTGGCTTTGGACTTTCTATTTTTATCTACTGGTTTGCCGTTCACTCCTGTGATCTCATCGCCAGCCGCCAGAGTCCCCTCCAGAGCAGCAGGGGTGTTGTCAAAGACCTGAGAGATCCCAGTTACAGTAAATAAGGCTATCTTGTCTGATCCCAGTCCGTCCGTCTTGCAACTCAAACCACATTCAGGGCCCCTTTCGCCACCAGTGACAACATGGCAATGCCAATGGAACTTGAGCTGAAGCATGTGGAGCTGAGAGCTGGAGACCAGTTGAAAGTACAGGGGAGGATTATGGATGAGGCTGAGAGGGTTTCTGGATTTCCCATATCCAGGTTCCAGATCGACCTGGGCTGTGATGAAGATGACCTGGCACTGCACTTTAACCCACGCTTCAATGATGACACTGATGGTACTGTGCTCGTGTGCAACTCAAAGATTGCCGGCTGCTGGGgtgatgagaagagagagatccACAATCCACTCCAAAGGGGTTCTACATTCAAGATTGTGCTGAAGCTGACGGGCGACATGTTTGAAGTGGAGATGCCTGATGGACAGGAGATCCAGTTCCCCAATCGTGAAGGCCTACATGTCATTACCTACATTCGTATCAAAGGAGACCTCAAACTTACTTCTTTCAAAATCTACTAGACCCCAATATATGAGGGGTGATTTAGTTAGATCAATGGGTGAGGACAGGAGCAATGACACTCATCAAATCATTGTTCTAATATATGTATTAGTGAACTGTTGGGCATATTAAATATGTATCTGGGTTGACCACAGTCTATCACTGTTTATCTTTTTTTCCCCATAGTATGGTATATTTGTTGCAATAATATTCACAATCTCACATACACTAAACTCAAGGGTAATATGAAGATGAGGTTATGGAACTATTTGCCCTGGAATTTTAGGTCATAA
>XM_036938453.1
GTCCTGTTCTCACTAACTCCGCTGAGCGATCGGAGGTGTCCCTATTATTTAACATCCAATAGTGACCGCAGTCCTTTTCAGACTGACTGGTAATTTACTGCTAAAAAACACAGAATCCAGAATTAAATACTGTGGCTTTGGACTTTCTATTTTTATCTACTGGTTTGCCGTTCACTCCTGTGATCTCATCGCCAGCCGCCAGAGTCCCCTCCAGAGCAGCAGGGGTGTTGTCAAAGACCTGAGAGATCCCAGTTACAGTAAATAAGGCTATCTTGTCTGATCCCAGTCCGTCCGTCTTGCAACTCAAACCACATTCAGGGCCCCTTTCGCCACCAGTGACAACATGGCAATGCCAATGGAACTTGAGCTGAAGCATGTGGAGCTGAGAGCTGGAGACCAGTTGAAAGTACAGGGGAGGATTATGGATGAGGCTGAGAGGTTCCAGATCGACCTGGGCTGTGATGAAGATGACCTGGCACTGCACTTTAACCCACGCTTCAATGATGACACTGATGGTACTGTGCTCGTGTGCAACTCAAAGATTGCCGGCTGCTGGGgtgatgagaagagagagatccACAATCCACTCCAAAGGGGTTCTACATTCAAGATTGTGCTGAAGCTGACGGGCGACATGTTTGAAGTGGAGATGCCTGATGGACAGGAGATCCAGTTCCCCAATCGTGAAGGCCTACATGTCATTACCTACATTCGTATCAAAGGAGACCTCAAACTTACTTCTTTCAAAATCTACTAGACCCCAATATATGAGGGGTGATTTAGTTAGATCAATGGGTGAGGACAGGAGCAATGACACTCATCAAATCATTGTTCTAATATATGTATTAGTGAACTGTTGGGCATATTAAATATGTATCTGGGTTGACCACAGTCTATCACTGTTTATCTTTTTTTCCCCATAGTATGGTATATTTGTTGCAATAATATTCACAATCTCACATACACTAAACTCAAGGGTAATATGAAGATGAGGTTATGGAACTATTTGCCCTGGAATTTTAGGTCATAA
>XM_036938451.1
tatgaggaaatagcaagcattttttttaacggtctgtttgagatacaacTTTAAGTAAATAAGGCTATCTTGTCTGATCCCAGTCCGTCCGTCTTGCAACTCAAACCACATTCAGGGCCCCTTTCGCCACCAGTGACAACATGGCAATGCCAATGGAACTTGAGCTGAAGCATGTGGAGCTGAGAGCTGGAGACCAGTTGAAAGTACAGGGGAGGATTATGGATGAGGCTGAGAGGGTTTCTGGATTTCCCATATCCAGGTTCCAGATCGACCTGGGCTGTGATGAAGATGACCTGGCACTGCACTTTAACCCACGCTTCAATGATGACACTGATGGTACTGTGCTCGTGTGCAACTCAAAGATTGCCGGCTGCTGGGgtgatgagaagagagagatccACAATCCACTCCAAAGGGGTTCTACATTCAAGATTGTGCTGAAGCTGACGGGCGACATGTTTGAAGTGGAGATGCCTGATGGACAGGAGATCCAGTTCCCCAATCGTGAAGGCCTACATGTCATTACCTACATTCGTATCAAAGGAGACCTCAAACTTACTTCTTTCAAAATCTACTAGACCCCAATATATGAGGGGTGATTTAGTTAGATCAATGGGTGAGGACAGGAGCAATGACACTCATCAAATCATTGTTCTAATATATGTATTAGTGAACTGTTGGGCATATTAAATATGTATCTGGGTTGACCACAGTCTATCACTGTTTATCTTTTTTTCCCCATAGTATGGTATATTTGTTGCAATAATATTCACAATCTCACATACACTAAACTCAAGGGTAATATGAAGATGAGGTTATGGAACTATTTGCCCTGGAATTTTAGGTCATAA
>XM_036938454.1
gaggaaatagcaagcattttttttaacggtctgtttgagatacaacTTTAAGTAAATAAGGCTATCTTGTCTGATCCCAGTCCGTCCGTCTTGCAACTCAAACCACATTCAGGGCCCCTTTCGCCACCAGTGACAACATGGCAATGCCAATGGAACTTGAGCTGAAGCATGTGGAGCTGAGAGCTGGAGACCAGTTGAAAGTACAGGGGAGGATTATGGATGAGGCTGAGAGGTTCCAGATCGACCTGGGCTGTGATGAAGATGACCTGGCACTGCACTTTAACCCACGCTTCAATGATGACACTGATGGTACTGTGCTCGTGTGCAACTCAAAGATTGCCGGCTGCTGGGgtgatgagaagagagagatccACAATCCACTCCAAAGGGGTTCTACATTCAAGATTGTGCTGAAGCTGACGGGCGACATGTTTGAAGTGGAGATGCCTGATGGACAGGAGATCCAGTTCCCCAATCGTGAAGGCCTACATGTCATTACCTACATTCGTATCAAAGGAGACCTCAAACTTACTTCTTTCAAAATCTACTAGACCCCAATATATGAGGGGTGATTTAGTTAGATCAATGGGTGAGGACAGGAGCAATGACACTCATCAAATCATTGTTCTAATATATGTATTAGTGAACTGTTGGGCATATTAAATATGTATCTGGGTTGACCACAGTCTATCACTGTTTATCTTTTTTTCCCCATAGTATGGTATATTTGTTGCAATAATATTCACAATCTCACATACACTAAACTCAAGGGTAATATGAAGATGAGGTTATGGAACTATTTGCCCTGGAATTTTAGGTCATAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K10090 LGALS2; galectin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625133.2 False 1005 mRNA 0.45 6 75728122 75735536
XM_036938452.1 False 1037 mRNA 0.45 6 75728122 75735536
XM_036938450.1 False 1063 mRNA 0.45 6 75728124 75735536
XM_036938453.1 False 1030 mRNA 0.45 6 75728133 75735536
XM_036938451.1 False 851 mRNA 0.43 5 75733143 75735536
XM_036938454.1 True 824 mRNA 0.43 5 75733146 75735536

Neighbor

gene id symbol gene type direction distance location
LOC110538365 LOC106601233 coding upstream 29618 75680508 ~ 75698504 (+)
LOC110538369 csdc2 coding upstream 63801 75659965 ~ 75664321 (+)
LOC110538368 LOC106601238 coding upstream 68407 75650919 ~ 75659715 (+)
LOC110538366 LOC106607160 coding upstream 78532 75638254 ~ 75649590 (+)
LOC110538372 LOC106601241 coding upstream 104169 75619338 ~ 75623953 (+)
LOC110538360 LOC104946491 coding downstream 39440 75774976 ~ 75790602 (+)
LOC110538359 LOC106601229 coding downstream 56719 75792255 ~ 75821063 (+)
LOC110538357 kc1e coding downstream 87952 75823488 ~ 75835962 (+)
LOC110538356 LOC106607146 coding downstream 102530 75838066 ~ 75853712 (+)
LOC110538354 LOC106607143 coding downstream 144265 75879801 ~ 75887011 (+)
G1111942 NA non-coding upstream 13290 75714631 ~ 75714832 (+)
G1111940 NA non-coding upstream 16095 75711698 ~ 75712027 (+)
G1111938 NA non-coding upstream 17551 75710353 ~ 75710571 (+)
G1111932 NA non-coding upstream 48272 75679497 ~ 75679850 (+)
G1111930 NA non-coding upstream 90195 75636579 ~ 75637927 (+)
G1111974 NA non-coding downstream 22828 75758364 ~ 75758649 (+)
G1111977 NA non-coding downstream 28503 75764039 ~ 75764239 (+)
G1111999 NA non-coding downstream 85920 75821456 ~ 75821759 (+)
G1111805 LOC105030512 other upstream 304959 75418789 ~ 75423163 (+)
G1111126 LOC106578813 other upstream 679766 74960266 ~ 75048356 (+)
G1109786 NA other upstream 1881328 73846255 ~ 73846794 (+)
G1109778 NA other upstream 1893516 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 2342255 73384755 ~ 73386199 (+)
G1111961 NA other downstream 9603 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 15334 75750870 ~ 75753593 (+)
G1111968 LOC106601158 other downstream 160076 75895612 ~ 75895873 (+)

Expression


Co-expression Network