RNA id: XM_036938453.1



Basic Information


Item Value
RNA id XM_036938453.1
length 1030
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110538363
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75728122 ~ 75735536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCCTGTTCTCACTAACTCCGCTGAGCGATCGGAGGTGTCCCTATTATTTAACATCCAATAGTGACCGCAGTCCTTTTCAGACTGACTGGTAATTTACTGCTAAAAAACACAGAATCCAGAATTAAATACTGTGGCTTTGGACTTTCTATTTTTATCTACTGGTTTGCCGTTCACTCCTGTGATCTCATCGCCAGCCGCCAGAGTCCCCTCCAGAGCAGCAGGGGTGTTGTCAAAGACCTGAGAGATCCCAGTTACAGTAAATAAGGCTATCTTGTCTGATCCCAGTCCGTCCGTCTTGCAACTCAAACCACATTCAGGGCCCCTTTCGCCACCAGTGACAACATGGCAATGCCAATGGAACTTGAGCTGAAGCATGTGGAGCTGAGAGCTGGAGACCAGTTGAAAGTACAGGGGAGGATTATGGATGAGGCTGAGAGGTTCCAGATCGACCTGGGCTGTGATGAAGATGACCTGGCACTGCACTTTAACCCACGCTTCAATGATGACACTGATGGTACTGTGCTCGTGTGCAACTCAAAGATTGCCGGCTGCTGGGgtgatgagaagagagagatccACAATCCACTCCAAAGGGGTTCTACATTCAAGATTGTGCTGAAGCTGACGGGCGACATGTTTGAAGTGGAGATGCCTGATGGACAGGAGATCCAGTTCCCCAATCGTGAAGGCCTACATGTCATTACCTACATTCGTATCAAAGGAGACCTCAAACTTACTTCTTTCAAAATCTACTAGACCCCAATATATGAGGGGTGATTTAGTTAGATCAATGGGTGAGGACAGGAGCAATGACACTCATCAAATCATTGTTCTAATATATGTATTAGTGAACTGTTGGGCATATTAAATATGTATCTGGGTTGACCACAGTCTATCACTGTTTATCTTTTTTTCCCCATAGTATGGTATATTTGTTGCAATAATATTCACAATCTCACATACACTAAACTCAAGGGTAATATGAAGATGAGGTTATGGAACTATTTGCCCTGGAATTTTAGGTCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1264195 lncRNA upstream 13301 75714631 ~ 75714832 (+) True G1111942
TU1264193 lncRNA upstream 16106 75711698 ~ 75712027 (+) True G1111940
TU1264191 lncRNA upstream 17562 75710353 ~ 75710571 (+) True G1111938
TU1264185 lncRNA upstream 48283 75679497 ~ 75679850 (+) True G1111932
TU1264183 lncRNA upstream 90206 75636579 ~ 75637927 (+) True G1111930
TU1264232 lncRNA downstream 22828 75758364 ~ 75758649 (+) True G1111974
TU1264235 lncRNA downstream 28503 75764039 ~ 75764239 (+) True G1111977
TU1264252 lncRNA downstream 53707 75789243 ~ 75790094 (+) True LOC110538360
TU1264216 lncRNA downstream 56766 75792302 ~ 75794213 (+) True LOC110538359
TU1264260 lncRNA downstream 85920 75821456 ~ 75821759 (+) True G1111999
XM_021625135.2 mRNA upstream 29629 75680508 ~ 75698504 (+) False LOC110538365
XM_021625134.2 mRNA upstream 29632 75680515 ~ 75698501 (+) True LOC110538365
XM_021625144.2 mRNA upstream 63812 75659965 ~ 75664321 (+) True LOC110538369
XM_021625142.2 mRNA upstream 68418 75650919 ~ 75659715 (+) False LOC110538368
XR_005035138.1 mRNA downstream 39440 75774976 ~ 75790023 (+) False LOC110538360
XM_021625126.2 mRNA downstream 39448 75774984 ~ 75790602 (+) False LOC110538360
XM_021625123.2 mRNA downstream 56719 75792255 ~ 75821063 (+) False LOC110538359
XM_021625120.2 mRNA downstream 87952 75823488 ~ 75835962 (+) False LOC110538357
XM_021625121.2 mRNA downstream 87952 75823488 ~ 75835962 (+) False LOC110538357
TU1264041 other upstream 304970 75418789 ~ 75423163 (+) True G1111805
TU1263295 other upstream 679777 74960266 ~ 75048356 (+) True G1111126
TU1261780 other upstream 1881339 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1893527 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 2342266 73384808 ~ 73385867 (+) True LOC110538462
TU1264215 other downstream 9603 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 15334 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 48814 75784350 ~ 75786987 (+) False LOC110538360
TU1264248 other downstream 52000 75787536 ~ 75788291 (+) False LOC110538360
TU1264268 other downstream 113069 75848605 ~ 75853712 (+) True LOC110538356

Expression Profile