LOC110486735 (LOC100380774)


Basic Information

Item Value
gene id LOC110486735
gene name LOC100380774
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51344378 ~ 51373991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941440.1
ttatgtgtagttgcctgtgagcacgccATAGATTCACTTGTCGTTTgcgctttattgtttttgtgcgtttcacgaataaaaagatgtggaacccatatcacgctgcgccttggtccaaatgttcttacgacgatcgtgacaccatgctagattacggagacataatttaaagatcggcagCTCTTCACCTTGCCCTGCTGATGGAACATGTATCAGGCTGTCCTAAAGGATTCTCTACAAATGGGAAACATTGCATTGATGAGAATGAGTGTAATCCTCCTAGTGATGACTATAACTATGACACTGAAACACCACATATCTGTGGTAAGAATGCAGCATGCATCAACACCAATGGAAGCTTCTACTGTCAATGTGCTCCTGGGTTCAGATCATCATCACAGTGGATGAACTTCACAGCTGACTCACCTGAAAAATGTCTAGACATCAACGAGTGTTTGGAGAATAAGGACATCTGTGGTCCCAATGCCGAGTGTCACAATACATTAGGGTCCTACTCCTGCATCTGCAATGAGGGGTTTGTCTCCAGTACTGGAGTGGAAATATTTATATTTGGCCAAGGAGTCACATGTGAAGATAGAAACGAGTGTGAGGACGACATCACAATTTGCGGGAAGCATACACAGTGCGTCAACACACCAGGCAACTACTCCTGTGTCTGCAATCCAGGGTTTGGCCTGAAGTCTGGCAACGCTCAATTCACAGGGAATAGAGAATCGTGTGAGGAAATAACAGATCAGAAAGCCACCACAGACCAGACAGCAACCACAGACAGTGAGGATGCTCAAGGTGCTAAAGACTTGTGTAAAATAAATAAGTTTATCTGTGGAGGGAATGGAACGTGCCATAATGCCACCAACGGTGGCCATCGGTGTGCGTGCCATGCAGGATTCACCAACTACGGAGACCCGCAGGGGAGATGTACTGAGTTGAACTGTGATATGTTTGCGAGCGAGAAGCAGATGGTCATCCCAGGTCTGCAGGATGCTGTGGCCCTGATGAGGACCAGTTGTCTGGAGTTGAGGGAGAGTAATACGGCAGAACAAGTCGATGGAGAGGCCCTGCTAGAGacTCTGTTGTCTGCTATAGACAGGCTCCTGTCTGGCGGGCCTCTGAAAAATAACAAGGAAGTGAGTGTCTTGCTGGACCTGGTAGAGACTGCTCTGAGAATTATAGGACCTCTGCTGAAACATCCCGAGACCAGGAGGTTCAAAACTCACACCGAGGTGGAGCTGTTGGTGCAGAGAAATGCCTCCTCACCCCAGGGGCCCCTCACCTTGTCATCTACACACGCTCAGCTAGACAGCCACTGGGAGACTGCTGCTGGAGACACCTCCTACCCAGGATTTGCAACAGTGTCCCTGCTCAGCTATAAGGGTCTGGAGACATCCACCAACCATTCCTTCTCAGGGCTGCAGGCACAGGAGGGCCACAGCTTTCAGATCAACTCCAAAGTGGTGACGGCCACCATGAGTAACAAGGACACATCCTTTCTCAAGGAGCCAGTCACATTCACCTTCTCCCATTTGAAGGAGACAGATGAAGGGAACTACACCTGTGTGTACTGGGATGAGTTGGGAGAAGGGACCTGGTCTGATCGAGGCTGTTTCCTGGTGCAGTCCAATGCCACCCACACTGTGTGCTCCTGCTACCATCTCAGCAGTTTTGCTGTTCTTATGGCTCTCTATGAGTTCAAGgacaCATTCCAGCTGCAGCTGATCACCTGGGTgggcctgtccctgtccctgctgtgTCTCTTCATCTGcatcctcaccttctccctgatcCGCTCCATCCGGAGCACCCGCAATACCATCCACCTCCACCTCTGCCTCAGCCTCTTCATCGCCAACCTGATCTTCCTCGTCGGCATCTCACGCACCGAGAGCCAGGCTGGTTGTGCGGTGGTGGCTGGGCTGCTTCACTTCTTCTTCCTGTCGGCGTTCTGCTGGATGTGTCTGGAGGGAGTACAGCTCTTCAGAATGGTGGTTCTGGTCTTCAACACCACCTTAAGGCCCCTCTACATGATGGCGGGGGGCTACGGCGTTCCTGCTGTCATCGTCGCCATCTCTGCCCTCGCCAACGCCAAAGGATACGGAACCGAGCGCCActgcTGGCTcaaccttgaggatggattcatCTGGAGCTTCTTTGGCCCTGTCTGTATCATCATCATGgtgAATGTGTTTTTCTTCCTCATCACAGTGTGGAAGTTGGCCCAGAAGTTCTCCAGCCTGAACCCTGACCTTGACAAACTCCGCAAATTCAAGGCATTCACCATAACTGCAGTGGCTCAGCTGTGTGTGCTGGGCACCATGTGGATCTTTGGCTGTTTCCAGTTTGAGGAAAGCACGCTGGCCATGTCGTACCTGTTCACCATCCTCAACAGTCTGCAGGGGGTCCTAGTGTTCCTCATGCACTGCCTGCTCTCTAAACAGGTGAGAGAGGAGTATGGCAAGATCCTGGACAGCATCTGTGCACTGCAGAAGACGAAGTACTCAGAGTTTTCCTCCAACCAGTCAAGCAACAGCAAATCACAGACATCCAAGAGCGCACAGAACACGGGAGAGTCTCAGATCTAGGGGGCTGGGCGCTGGTTGCTGGACATGACCCCATGATGCCTGACCTCGTGACCTCCTAGCAACACCTGGGAGTTTTATAAAACCATAATCACCCTGGTTTTATGACAGGCATAAGTTAATgcttgcctggtcccagatcggtttgtgctgtcttgccaaaagAGCACAAAAGGACCAGGATAGATTGATGGGATGGTTgatgtctgttttttttgtgaCAACTATATTTCGCTTTAAGCAGTATTGTGCACATTTTTTAAAGATTCTATAAATATTACTGTACTTTCTCGTTGTGCTGGCCTCGATATTATTTTAAGCTAAAACTCCAAAGAGTAACGTTATTTATTGTTTTACACTGATTTTCCTATTGACAGTTTCATGTGTCTTTTTCCAACCTTGATATTCTTTGGATTATATAATGCTGATGAGAAACCCCCCTCCTACTGTAGAAGAGTGGACTAGTCCTGCATGGTTTAACCAGGGACAACTCATCATGGATTATTACATTATGCATTATCCAGGTACTTTCTCTGATCTTAAAATACATAACAGATGAAAGCaacaatttatttaaaaaatagtcATAAGCTATcatggttttatttatttttaaatcattGTTTAAAACAACCATCAAAGGTCGAGTTGTGAGAGTCAAATTGAAATCATGTCAGATTGAAATGGATATTCTGTGTCTATAGTTTTATTGtatctcaatttaaaaaaaagatcAACCAAAAAATGTACAAGAATCATGATTATGACTGCTACATCGTTTCTAGTAAGGTGTGCATCCTGTCAAATAAGAACGAATTAAAAttattgtaaatattttcttagtgAAGATCATTtgtatgattgttttttttactggGAAATGGCATGCTTTTACCACTGTACTGTAACTTCTCTGATTTTAGACTTTATTTTCCATGCAATATTTTAATTCAATAAAATTAAAATATTTTA
>XM_021558558.2
CTCTTAGTATGTCAGTGAGccagacacagcccagaccaccacagccaaacacacagggtggaagagaaggagagcgagtcagagacagagagttcTAGGCAAGTGATGAGAGCACAGTGACTACTTGTCATTTTCTCTCTCatttggtgatgtcagcagagCTCAATCTACTAGACAGAAGCTTGACTGAGTTGATGGATACGGGTGCCATTTTTCTTCAGTAAAACAACCCTGAGAAGTTTGGAGAAACTCCTGAGAAGAAGAGAAGACGGATCTTTATCACACTTTTGAATAGACCGTTCAGATAGGGGCAGAGTTTCAGCCCTGGTCTAATCTTGTGCGTTGTGATTCTCATAGAGATAGTGAGATTCTTCTTCACCATGACAGGCAGACTGCATCTCCTGATTCTGGCTCTTCACCTTGCCCTGCTGATGGAACATGTATCAGGCTGTCCTAAAGGATTCTCTACAAATGGGAAACATTGCATTGATGAGAATGAGTGTAATCCTCCTAGTGATGACTATAACTATGACACTGAAACACCACATATCTGTGGTAAGAATGCAGCATGCATCAACACCAATGGAAGCTTCTACTGTCAATGTGCTCCTGGGTTCAGATCATCATCACAGTGGATGAACTTCACAGCTGACTCACCTGAAAAATGTCTAGACATCAACGAGTGTTTGGAGAATAAGGACATCTGTGGTCCCAATGCCGAGTGTCACAATACATTAGGGTCCTACTCCTGCATCTGCAATGAGGGGTTTGTCTCCAGTACTGGAGTGGAAATATTTATATTTGGCCAAGGAGTCACATGTGAAGATAGAAACGAGTGTGAGGACGACATCACAATTTGCGGGAAGCATACACAGTGCGTCAACACACCAGGCAACTACTCCTGTGTCTGCAATCCAGGGTTTGGCCTGAAGTCTGGCAACGCTCAATTCACAGGGAATAGAGAATCGTGTGAGGAAATAACAGATCAGAAAGCCACCACAGACCAGACAGCAACCACAGACAGTGAGGATGCTCAAGGTGCTAAAGACTTGTGTAAAATAAATAAGTTTATCTGTGGAGGGAATGGAACGTGCCATAATGCCACCAACGGTGGCCATCGGTGTGCGTGCCATGCAGGATTCACCAACTACGGAGACCCGCAGGGGAGATGTACTGAGTTGAACTGTGATATGTTTGCGAGCGAGAAGCAGATGGTCATCCCAGGTCTGCAGGATGCTGTGGCCCTGATGAGGACCAGTTGTCTGGAGTTGAGGGAGAGTAATACGGCAGAACAAGTCGATGGAGAGGCCCTGCTAGAGacTCTGTTGTCTGCTATAGACAGGCTCCTGTCTGGCGGGCCTCTGAAAAATAACAAGGAAGTGAGTGTCTTGCTGGACCTGGTAGAGACTGCTCTGAGAATTATAGGACCTCTGCTGAAACATCCCGAGACCAGGAGGTTCAAAACTCACACCGAGGTGGAGCTGTTGGTGCAGAGAAATGCCTCCTCACCCCAGGGGCCCCTCACCTTGTCATCTACACACGCTCAGCTAGACAGCCACTGGGAGACTGCTGCTGGAGACACCTCCTACCCAGGATTTGCAACAGTGTCCCTGCTCAGCTATAAGGGTCTGGAGACATCCACCAACCATTCCTTCTCAGGGCTGCAGGCACAGGAGGGCCACAGCTTTCAGATCAACTCCAAAGTGGTGACGGCCACCATGAGTAACAAGGACACATCCTTTCTCAAGGAGCCAGTCACATTCACCTTCTCCCATTTGAAGGAGACAGATGAAGGGAACTACACCTGTGTGTACTGGGATGAGTTGGGAGAAGGGACCTGGTCTGATCGAGGCTGTTTCCTGGTGCAGTCCAATGCCACCCACACTGTGTGCTCCTGCTACCATCTCAGCAGTTTTGCTGTTCTTATGGCTCTCTATGAGTTCAAGgacaCATTCCAGCTGCAGCTGATCACCTGGGTgggcctgtccctgtccctgctgtgTCTCTTCATCTGcatcctcaccttctccctgatcCGCTCCATCCGGAGCACCCGCAATACCATCCACCTCCACCTCTGCCTCAGCCTCTTCATCGCCAACCTGATCTTCCTCGTCGGCATCTCACGCACCGAGAGCCAGGCTGGTTGTGCGGTGGTGGCTGGGCTGCTTCACTTCTTCTTCCTGTCGGCGTTCTGCTGGATGTGTCTGGAGGGAGTACAGCTCTTCAGAATGGTGGTTCTGGTCTTCAACACCACCTTAAGGCCCCTCTACATGATGGCGGGGGGCTACGGCGTTCCTGCTGTCATCGTCGCCATCTCTGCCCTCGCCAACGCCAAAGGATACGGAACCGAGCGCCActgcTGGCTcaaccttgaggatggattcatCTGGAGCTTCTTTGGCCCTGTCTGTATCATCATCATGgtgAATGTGTTTTTCTTCCTCATCACAGTGTGGAAGTTGGCCCAGAAGTTCTCCAGCCTGAACCCTGACCTTGACAAACTCCGCAAATTCAAGGCATTCACCATAACTGCAGTGGCTCAGCTGTGTGTGCTGGGCACCATGTGGATCTTTGGCTGTTTCCAGTTTGAGGAAAGCACGCTGGCCATGTCGTACCTGTTCACCATCCTCAACAGTCTGCAGGGGGTCCTAGTGTTCCTCATGCACTGCCTGCTCTCTAAACAGGTGAGAGAGGAGTATGGCAAGATCCTGGACAGCATCTGTGCACTGCAGAAGACGAAGTACTCAGAGTTTTCCTCCAACCAGTCAAGCAACAGCAAATCACAGACATCCAAGAGCGCACAGAACACGGGAGAGTCTCAGATCTAGGGGGCTGGGCGCTGGTTGCTGGACATGACCCCATGATGCCTGACCTCGTGACCTCCTAGCAACACCTGGGAGTTTTATAAAACCATAATCACCCTGGTTTTATGACAGGCATAAGTTAATgcttgcctggtcccagatcggtttgtgctgtcttgccaaaagAGCACAAAAGGACCAGGATAGATTGATGGGATGGTTgatgtctgttttttttgtgaCAACTATATTTCGCTTTAAGCAGTATTGTGCACATTTTTTAAAGATTCTATAAATATTACTGTACTTTCTCGTTGTGCTGGCCTCGATATTATTTTAAGCTAAAACTCCAAAGAGTAACGTTATTTATTGTTTTACACTGATTTTCCTATTGACAGTTTCATGTGTCTTTTTCCAACCTTGATATTCTTTGGATTATATAATGCTGATGAGAAACCCCCCTCCTACTGTAGAAGAGTGGACTAGTCCTGCATGGTTTAACCAGGGACAACTCATCATGGATTATTACATTATGCATTATCCAGGTACTTTCTCTGATCTTAAAATACATAACAGATGAAAGCaacaatttatttaaaaaatagtcATAAGCTATcatggttttatttatttttaaatcattGTTTAAAACAACCATCAAAGGTCGAGTTGTGAGAGTCAAATTGAAATCATGTCAGATTGAAATGGATATTCTGTGTCTATAGTTTTATTGtatctcaatttaaaaaaaagatcAACCAAAAAATGTACAAGAATCATGATTATGACTGCTACATCGTTTCTAGTAAGGTGTGCATCCTGTCAAATAAGAACGAATTAAAAttattgtaaatattttcttagtgAAGATCATTtgtatgattgttttttttactggGAAATGGCATGCTTTTACCACTGTACTGTAACTTCTCTGATTTTAGACTTTATTTTCCATGCAATATTTTAATTCAATAAAATTAAAATATTTTA
>TU1351824
ccaaacacacagggtggaagagaaggagagcgagtcagagacagagagttcTAGGCAAGTGATGAGAGCACAGTGACTACTTGTCATTTTCTCTCTCatttggtgatgtcagcagagCTCAATCTACTAGACAGAAGCTTGACTGAGTTGATGGATACGGGTGCCATTTTTCTTCAGTAAAACAACCCTGAGAAGTTTGGAGAAACTCCTGAGAAGAAGAGAAGACGGATCTTTATCACACTTTTGAATAGACCGTTCAGATAGGGGCAGAGTTTCAGCCCTGGTCTAATCTTGTGCGTTGTGATTCTCATAGAGATAGTGAGATTCTTCTTCACCATGACAGGCAGACTGCATCTCCTGATTCTGGCTCTTCACCTTGCCCTGCTGATGGAACATGTATCAGGCTGTCCTAAAGGATTCTCTACAAATGGGAAACATTGCATTGATGAGAATGAGTGTAATCCTCCTAGTGATGACTATAACTATGACACTGAAACACCACATATCTGTGGTAAGAATGCAGCATGCATCAACACCAATGGAAGCTTCTACTGTCAATGTGCTCCTGGGTTCAGATCATCATCACAGTGGATGAACTTCACAGCTGACTCACCTGAAAAATGTCTAGGTAAATGTTAAGgaaatttttatcaatgatgactaattatgtatacatttcaatcaggactgactagtacaaatgctattatgtactgtacatatatgcattttctctcttgctcccattcccaattgtatataatatagtcaggagtttagtaacaatgacggtctgttcatttgtacaaatgaatgaactatctccagactgtctagaatgctgatttacaatgacggacctTGGCTtcaggcgaggaggg

Function

NR:

description
CD97 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941440.1 False 3569 mRNA 0.46 19 51344378 51373991
XM_021558558.2 False 3800 mRNA 0.46 19 51352198 51373991
TU1351824 True 881 lncRNA 0.42 3 51352242 51359723

Neighbor

gene id symbol gene type direction distance location
LOC110486733 LOC106606838 coding upstream 351536 50991494 ~ 50992842 (+)
LOC110485209 LOC105013079 coding upstream 379161 50939574 ~ 50965217 (+)
LOC110486729 light coding upstream 449899 50885729 ~ 50894479 (+)
dnm2a NA coding upstream 468076 50832804 ~ 50876302 (+)
LOC110486723 LOC106601660 coding upstream 624559 50715377 ~ 50719819 (+)
LOC110487554 LOC106601638 coding downstream 17869 51384172 ~ 51394113 (+)
LOC110486737 LOC106606772 coding downstream 20445 51394436 ~ 51404580 (+)
LOC110486745 LOC106601712 coding downstream 188373 51562364 ~ 51566331 (+)
LOC110486751 LOC106606781 coding downstream 212255 51586246 ~ 51590496 (+)
LOC118938087 NA coding downstream 389590 51760793 ~ 51765924 (+)
G1185366 NA non-coding upstream 30393 51313766 ~ 51313985 (+)
G1185347 NA non-coding upstream 54128 51289810 ~ 51290250 (+)
G1185343 NA non-coding upstream 58144 51285958 ~ 51286234 (+)
G1185342 NA non-coding upstream 58529 51285630 ~ 51285849 (+)
G1185327 NA non-coding upstream 72664 51271479 ~ 51271714 (+)
G1185435 NA non-coding downstream 68926 51442917 ~ 51471830 (+)
G1185451 NA non-coding downstream 91352 51465343 ~ 51468001 (+)
G1185457 NA non-coding downstream 102344 51476335 ~ 51481810 (+)
G1185464 NA non-coding downstream 111068 51485059 ~ 51486576 (+)
G1185466 NA non-coding downstream 115478 51489469 ~ 51489672 (+)
G1184435 LOC106606845 other upstream 357812 50985813 ~ 50986566 (+)
G1183875 NA other upstream 1460943 49882821 ~ 49883435 (+)
G1183819 NA other upstream 1509364 49832221 ~ 49835014 (+)
ndua4 ndua4 other upstream 1759816 49580324 ~ 49584562 (+)
G1182742 NA other upstream 1918155 49419570 ~ 49426223 (+)
G1185436 NA other downstream 71916 51445907 ~ 51446557 (+)
G1185521 NA other downstream 253691 51627682 ~ 51628676 (+)
G1185527 NA other downstream 277622 51651613 ~ 51653770 (+)
G1185522 NA other downstream 319892 51693883 ~ 51695058 (+)

Expression


Co-expression Network