LOC110486745 (LOC106601712)


Basic Information

Item Value
gene id LOC110486745
gene name LOC106601712
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51562364 ~ 51566331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558573.2
AACACAGGATGGTTGTGTACATAAGGTGACGTGGAACAGGCGAGTGATAATGTGAATTTAGTGCACCGTGGTTGAAATTAAcaccattagctagctagtttattcAGACATCCAACGCAGTACACGTTTAAAAAAAGATTTAACTATGTGCTGCTGTTGTTAGGTGAGTTGCTATTGAGATATAAAGCGAGAAAACAGTGCTAGCTCGACAGCTGTCAGGCTAGCGAGGTGGTCGTGTCAGCACTGCTAACATAGCTGACTGGCTCGCATTGCGGATAAAACACAACAGAACCTCCTGCAACAAACAGGTCTTGCATGAGGTGGTCATCTTTCCAGAGTTACCATGGCGAGTCCAGATGATCTGAAGTTCCAAGAGTTTGAGGAGGCCACTGACCTGCTGTTAGCAGACCCTGGGGCCTCCACCCTCAGTATGTCTGGCTCCAGCAGTACGTTCCCGGCCGGTGCCACTGGGGACATCAAACTGGACATGTCCGATGATGAGGGACAGGAGGAGAGTTCAGAGCTCCTAAGAGGGGAGAAACAAACTAGCGGTTTCTGGACCTTTGAGTACTACCAGTCATTCTTCAATGTGGATACAATGCAGGTGCTGGACAGGGTCAAGGGGTCGGTGATGCCTTTACCAGGACGGCACTTTATCAAACATACCCTCCAGTCGAGTCCGGATTTATATGGTCCCTTCTGGATCTGCGTGACGCTGGTGTTCTCTCTGGCCATCAGTGGAAACCTGTCCACCTTCCTGAACTCTCTGGGGAGCCCCCATTACCACTACAGACCCCAGTTCCACAGAGTGACAATAGCTGCAGTAGTGATCTTCCTGTATGCCTGGCTGGTGCCCCTGGGTGTATGGGGTTTCCTGAcctggaggcagagggaggagcgGCAGCAGAGTGGTTACTCCTTCCTGGAGACAGTGTGTGTCTACGGCTACTCCCTCTTCATCTACATCCCCACCTCAGTGTTGTGGATCTTACCATTCGAATGGCTCCGATGGCTCCTCATCCTGGTCGCCATGGTGATCTCTGGGTCGGTCCTGGTGCTCACCTTCTGGCCTGTCGTCCGCGACGACACCAAGGTGACTGCTTTTGCCACTGTGGCAACAATCGTCGTTCTCCATGCGCTGCTATCAATTGGCTGCAAGATGTATTTCTTCCAGACAGCGACTCACACACCAGTTCCTACACTCGCACCCAACCACACAGCAGCAGTATTGACCAACAAGACCCACTGACCAAGAGgaaccagagggagggagatgtgtCAATGTTTGAGACCACTGGGGAATCTGAAAGGACTAGATAAAAGGTTTAGGCGCCTGCATACTCTGATGCTCTAACCAATAATAAGGATAGAGGACTGACAAGTGGTCAGAAAGGTACCCATAACGTTGTGTTGGAGGTTCTGGATATGTGAGATATCCTACTCTAGTACATTATGGACTTAACTGGATCAGCAGCCCATTAAAGTACTGTGTAATTGACTACAAATGTTATTACAAAGAGAAGGGACAAGGATAGAGGCCTATGAGTATAAACAAGTTATGGGTTATGAGGATTGCATTGGGGGGAAATGTTTTGCTTCTGCTGCAGAAATGATTCCGCACTTGTATATTGTAATAAATCAATATTTATCATGGAGAAGGTGGGTGTACCTCAATAGTCGGGAGACTTCCTCTTATCTAATTTTATCTGCACTAAAAAACATAGGAAAGGAGGAAGCATGAGATCTGCTCTAACCAGCTCAGTTCTGTCAGTGCAGATAGATACAAGGAAAGGAATTATTTTTTAGACTTGAAATCCTCAGCTGCAGTCTGATCTTGAGATGAACCTATTGAAGGGAAATGCTGTATGAATGTTTAACTAATGTACTAATACAGGGGTGGCCAACCTTACCCATAAAGGTGCATGCTTTTGTTCCAGCCAAGCAAAAACACCTGATTCTACCATCAGACGAGTTGGATCAACAGGTATGTTACAGCTTGGCTGGAACCAAGGCCTactacacccacaccagccctctGTGGGTGAGGTTGTATACCTCAGAGAAAAAAAAGGGTTGTTCTAGAACTCAAACTACTCCTATGACCTGGAACGTGTAGTACTGTGCTGACTAATGTATCCAGACCACTTTTTCTTTTTGTAGATAGACTTGTAAATTAAGGAAAGGGTTTGtcagtgtatttatttattctttgTTCACACTTCTGGGTTTGTGATTAAACTGTCATTTCAGTC

Function

NR:

description
protein YIPF1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K22940 YIPF1_2; protein YIPF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558573.2 True 2252 mRNA 0.47 9 51562364 51566331

Neighbor

gene id symbol gene type direction distance location
LOC110486737 LOC106606772 coding upstream 157784 51394436 ~ 51404580 (+)
LOC110487554 LOC106601638 coding upstream 168251 51384172 ~ 51394113 (+)
LOC110486735 LOC100380774 coding upstream 188373 51344378 ~ 51373991 (+)
LOC110486733 LOC106606838 coding upstream 569522 50991494 ~ 50992842 (+)
LOC110485209 LOC105013079 coding upstream 597147 50939574 ~ 50965217 (+)
LOC110486751 LOC106606781 coding downstream 19915 51586246 ~ 51590496 (+)
LOC118938087 NA coding downstream 197250 51760793 ~ 51765924 (+)
LOC118938318 LOC106606767 coding downstream 217557 51783888 ~ 51823957 (+)
LOC118938088 NA coding downstream 274121 51840452 ~ 51852886 (+)
LOC110486748 NA coding downstream 369711 51779397 ~ 51941040 (+)
G1185534 LOC106606779 non-coding upstream 997 51559721 ~ 51561367 (+)
G1185510 NA non-coding upstream 8428 51553700 ~ 51553936 (+)
G1185509 NA non-coding upstream 9046 51553108 ~ 51553318 (+)
G1185507 NA non-coding upstream 11139 51550964 ~ 51551225 (+)
G1185505 NA non-coding upstream 12835 51549314 ~ 51549529 (+)
G1185564 carm1 non-coding downstream 7690 51574021 ~ 51576755 (+)
G1185578 NA non-coding downstream 37739 51604070 ~ 51720989 (+)
G1185623 NA non-coding downstream 165630 51731961 ~ 51736516 (+)
G1185538 NA non-coding downstream 296262 51862593 ~ 51864290 (+)
G1185436 NA other upstream 115807 51445907 ~ 51446557 (+)
G1184435 LOC106606845 other upstream 575798 50985813 ~ 50986566 (+)
G1183875 NA other upstream 1678929 49882821 ~ 49883435 (+)
G1183819 NA other upstream 1727350 49832221 ~ 49835014 (+)
G1185521 NA other downstream 61351 51627682 ~ 51628676 (+)
G1185527 NA other downstream 85282 51651613 ~ 51653770 (+)
G1185522 NA other downstream 127552 51693883 ~ 51695058 (+)
G1185535 NA other downstream 131545 51697876 ~ 51698646 (+)
G1185616 NA other downstream 151417 51717748 ~ 51718204 (+)

Expression


Co-expression Network