LOC110486748


Basic Information

Item Value
gene id LOC110486748
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51779397 ~ 51941040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110486748
CAAAAACCCTTTGCTCCTGTATGGACACATCAACACTGAACAGGTGAAATAATCACCCCCCAGGACAATGGAACCAATGTAAACGTAATGAAACTTAACTGAAGATTAATCCACCAACTCATAGAGAATATAATTCTGTAAGATTCTTTAGCTTCTTATACCTCACTGAGAGCAGAGTCATATGGAACCCCTATGGAGATGTGAAGGAGGTGTTTTTGTGCTGGGGTATATCACTGTGATATGGGCTGGGGGGCACTGTGAAATGAGGCTGTACAAAAACCTCAGAGACAGAACCTGCATTATATCTGCATGAGGATTGGGACAATGGGGAGAAACCATACAATATTCTTCAAATGACCATCTGATGTTGATATAACCCCATGTCATGACATGGACCTGAGCATGAGTTTTTAAAAGGTATTCAAAACTGAATTCACAACATCTGTCCTTATGGATTCAGGTGTATGATAGTATTACAATATTGCATTCATTTGAATGTTTATTGGATTCATTATCATGACTTTAAAGCGACCTATTTAGGTGCAGGGTTTTTGTACAGTCAGTGAATGGAGACAGAGCACTGTGATGCTTTTGACTACTGGGGTAAAGGGACACAAGTCACCGTCTCAACAGCAGCCACAACCCCCCCTACTCTACTCACTCTTATGAACTGTGGAACCCCTTCTAACGACATCTACAGCCTCGCTTTTGTGTCGCTAAAGGCTTCTCGCCTTCCTCACACACCTTCAAATGGACAGACGCCAGTGGGAAAGCGCTGACGGACTTTGTCCAGTACCCAGCAGTCCAGAGCGGGGAAACCTACACAGGAGTCAGTCAGCTCCGCGTGGCTAAGAATGTCTGGGAAAACTCAAAGTCTTTCAGTTGTTCTGTGGATCATGCTGGAGATGTAAAGACAGCAGTCATCAATATACCAATCTCAAAGCTTCCAACAGTGTCTTTGCTGTCTGCACCCATTGGCACCACCCAGTACTTGATGTGTATAATTGAAGATTTCACCCCCAAGAAAGTCATTGTCACCTGGAAGAAGAATGACATGGAGGTGGAGGGCCAGAcccctactgtaggcctacagccATCAGGCCTCTACTCAGCCAGCAGTCTACTGAAGGTCACCAACACTGACTGGAACAACAAGGTCAAGTACAGCTGTGTGGTGGAGCACCAGGGACAACCCACCAACGAGACGATCTCCAAAACAGAACCACTGACGGTGACTCTGAACCCACCGAGTGTGAAAAAGGTGTTCATAGACAACCAAGCAGTGCTGGACTGTGTCATCACTGCTACAGACCAGGACACAGTATCTGGTACCACTATCACCTGGCATGTCAACGGAAAGAAACAGAAAGATCACATTGATCTGAAACCTATTGAATCAAAGGGCAACCTGAACAGCAGGGTCAGTACTCTGACCATAGACCAGACAAGGTGGACCAATTTGAACAAAGTCCAGTGTTCTGCCATGAAGAGAGGTGAAGTCACACAGGTCATTCAGGACCTCAGCTTTAACAAAGGAAGTGAAGCCCCTTCTGTGTCCGTCCACATTCTCCCGGAGGAAGACACCAGGGAGAAGGAGATTGTGACTCTCGTGTGCCTGGTGGTCAGCCCGTCTCTCTGTGACGTCTACATCATATGGAAGGTGAACAGCGGTGATTACCAGGAGGGGGTCACCAGCCCTCCTCAGAAAACCCAGAAAGGCAACTATTCTGTCACCAGCGTCTTCACCACCACCAAGAAGGAGTGGGAGGGAAACTCGGTTTTCACATGCGCCGTCAAGCACCTTGGCTCGGACAACAATACCacacctgaggagaggagtgtgtCGAAGTCCTTGGCGAACATCCTCATGACTGAGCCTGAGGCGGCTTCGCTCTGAGCTGCACGGACAACTTTGAGGATGAGTTCAGCAGCCTGTGGTCCACCACTTCCTccttcatcatcctcttccttctctccctctcctacagcACAGGACTCAGCCTGGTCAAGATGAAGCAGTGA
>TU1351979
TAGGATAAAATGGCACTGGCACTATATTTGCTCAGTCCCTCCAGGGCCAGTTCACCATCACCAAAGACAACTCCAAAAACCAGTTGTACTTAGAGGTGAAAAGCCTGAAGACTGAAGACTCTGCTGTTTATTATTGTGCCAGAGATATGGGCTGGGGGGCACTGTGAAATGAGGCTGTACAAAAACCTCAGAGACAGAACCTGCATTATATCTGCATGAGGATTGGGACAATGGGGAGAAACCATACAATATTCTTCAAATGACCATCTGATGTTGATATAACCCCATGTCATGACATGGACCTGAGCATGAGTTTTTAAAAGGTATTCAAAACTGAATTCACAACATCTGTCCTTATGGATTCAGGTGTATGATAGTATTACAATATTGCATTCATTTGAATGTTTATTGGATTCATTATCATGACTTTAAAGCGACCTATTTAGGTGCAGGGTTTTTGTACAGTCAGTGAATGGAGACAGAGCACTGTGATGCTTTTGACTACTGGGGTAAAGGGACACAAGTCACCGTCTCAACAGCAGCCACAACCCCCCCTACTCTACTCACTCTTATGAACTGTGG

Function

NR:

description
immunoglobulin heavy chain variable region, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110486748 False 2022 mRNA 0.48 7 51936042 51941040
TU1351979 True 582 lncRNA 0.42 4 51779397 51938068

Neighbor

gene id symbol gene type direction distance location
LOC118938088 NA coding upstream 83156 51840452 ~ 51852886 (+)
LOC118938318 LOC106606767 coding upstream 112085 51783888 ~ 51823957 (+)
LOC118938087 NA coding upstream 171426 51760793 ~ 51765924 (+)
LOC110486751 LOC106606781 coding upstream 345546 51586246 ~ 51590496 (+)
LOC110486745 LOC106601712 coding upstream 369711 51562364 ~ 51566331 (+)
LOC110486763 NA coding downstream 11076 51952116 ~ 51954859 (+)
LOC110485215 LOC106606764 coding downstream 107104 52014531 ~ 52091683 (+)
LOC110486764 LOC106606789 coding downstream 180443 52121483 ~ 52139499 (+)
LOC110486765 LOC106606792 coding downstream 200233 52141273 ~ 52142730 (+)
LOC110486767 alkb7 coding downstream 433784 52374824 ~ 52390015 (+)
G1185714 NA non-coding upstream 5588 51925089 ~ 51930454 (+)
G1185538 NA non-coding upstream 71752 51862593 ~ 51864290 (+)
G1185623 NA non-coding upstream 199526 51731961 ~ 51736516 (+)
G1185578 NA non-coding upstream 215053 51604070 ~ 51720989 (+)
G1185564 carm1 non-coding upstream 359287 51574021 ~ 51576755 (+)
G1185722 NA non-coding downstream 15130 51956170 ~ 52023060 (+)
G1185726 NA non-coding downstream 29933 51970973 ~ 51975692 (+)
G1185519 NA non-coding downstream 128785 52069825 ~ 52070857 (+)
G1185541 NA non-coding downstream 131200 52072240 ~ 52074041 (+)
G1185774 NA non-coding downstream 152335 52093375 ~ 52093611 (+)
G1185525 NA other upstream 36326 51898956 ~ 51899716 (+)
G1185687 NA other upstream 54066 51881388 ~ 51881976 (+)
G1185531 NA other upstream 55089 51869301 ~ 51880953 (+)
G1185530 NA other upstream 88662 51830790 ~ 51847380 (+)
G1185528 NA other downstream 22383 51963423 ~ 51965490 (+)
G1185815 NA other downstream 234226 52175266 ~ 52176505 (+)
G1185855 NA other downstream 333290 52274330 ~ 52355941 (+)
LOC110486737 LOC106606772 coding upstream 374817 51394436 ~ 51404580 (+)
LOC110487554 LOC106601638 coding upstream 385284 51384172 ~ 51394113 (+)
G1185534 LOC106606779 non-coding upstream 218030 51559721 ~ 51561367 (+)
G1185510 NA non-coding upstream 225461 51553700 ~ 51553936 (+)
G1185539 NA other upstream 45073 51733649 ~ 51734324 (+)
G1185616 NA other upstream 61193 51717748 ~ 51718204 (+)
G1185535 NA other upstream 80751 51697876 ~ 51698646 (+)
G1185522 NA other upstream 84339 51693883 ~ 51695058 (+)

Expression


Co-expression Network