LOC110485476 (LOC106564346)


Basic Information

Item Value
gene id LOC110485476
gene name LOC106564346
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 14112506 ~ 14118759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948028.1
CCGTGTGTCTGATCTGAAGAGAAGCTGAACAGAATGATGTCATCGGGTGTTCTGATGGTGCTCCTGTTCTTTAAGCATGTTACTGCAGACAGCTCAGGTACGGTTGTTACCAGTTGTGAGGCGTGTCATGACCAAGCCACCTGCCTAGACTCACCTGTGGAACGTGAGAGGGGAGATGCTTTCCAAACCTGGTCCGTCACTTGCACCTGTCAAGATGGCTTCGTTGGCGACGGCATCACCTGTTACGACCTTGAGTTCTGCGCTAAAGGCTCCTGCTGTCGTCAAGGTTACGGCTGGTCCTCGGAGCTGGGCTGTGTGGACGTTGACGAGTGTTCCCTCCCAGACCAACCCTGCAGCCCTCCTCAGGTCTGTGAGAACACCCCCGGATCCTTCAACTGCCTGGTGCCTCCTGAAGACAACCTCCACTCCAGTCCTGGTGACTCCCGTTCAGTGCAGTTTCAGTGCGGGGGGAGACGGTGTCCAGTGGGAGAGGACTGTATCAGTGTTGGTGGATCGTCCCTCTGTGCAGACCCCTGCCTGCACTACTCTGTACTGAATGACGACTGGCGTTCCACCACCAACTACGGTCCAGCTAATGGCTACCACTGTGACTCGTCTGTCAACTGGCAGGGCTGGTATCGCCTGTTCCTGGGGAACACCAGTGTTCAGATGCCAGAGAGGTGTGTGGAGAAATACATGTGTGGGACGGAGATCCCCTTGTGGCTTCCATTAGCTCATCCCCAGCTGTTAGACGGGGTGGTTCAGAGGAGCGTCTGTGGACACTATTATTATGACTGCTGCTACAGGAGGCAAAATCCCATCCATGTCAAAGCCTGCTATGGAAACTACTATGTCTACAAGTTTGTCCCTACAACACTATGCAACATGGCCTACTGTGCAGATGTCAACACCACGGTGTGTTCCACATGTGGAGTGTTTGATGCCTGTGTGAGAGACAATGAGACACACTGGAGATGTGAGAGGAAAGCTCCAGAGCTGGTGTGTGGGCGGAGCCTCCTGAAGGTGGGCCTTCCAAATGTTTACCTGGAGGCTGCTGGTCTGGATGCTTCCTCTGCCCACCTGGCTGACGGACGCTGCTCCGCCCACGAGGATCGTAACGGCTCAGTGTGGTACCAGGTGGAGCGACGGGAGGGACACTGTGGAAACACTCTGGAGACAAACACCACCCATGCTGTCTACTCCAACAGTTTATTTGTTTATCCAGTAGATGGGAGGAACGGCTCCCGACCCTTCGGCTTTCCCTTCTCCTGTGTCTATCCtctggagacagagagcagtCTGGATGTGGCCATCAGACCTCTCCCACTAACTGATCATGAAGTTGTCCGAGTCGGTGCCAAGGCCAAGGCCTCCATGTCTCTGTACCGCGACTCCAACTACACACAGCCTTACCCAGCTGGTCAGCCAGTCACCCTGATTGCGGGTTCCTCCCTGCACGTGGGCGTGTCCGTAGAGGAGTCCGAGGCAGAacgttttgttgttgttctggaagACTGCTACACCACGGAATCCCCCAGCCCTGATAATCTCCCACGGACCTACATGATTCAGGACAGGTGTCCTACAAATCGTACCCAGGTGACAGTGGAGGAAAGTGGCTCGTCCCTCAGGGCTTCGTTCTCTGCTCTACTGCAGGGGGAATACCGTTACATATTCCTGCACTGCAGACTCAGCCTGTGTGACCAGGGGAGCTCCTCCTGCACTCCAGTGTGTTCCAGGAGGAGATCCCGCTCTGTGTCCAAGTCCATCCGCCTCAAGCCGCTCACCATCGGGCCAATCACCTGGGCCCAGAGTCTGGAGTGAGCCTTGGGAGCCCCCAGCATGTCATATGAAGGATGGGGTCCCTCCTGAACTAATCCCCTGATCTCCATCCCAACCTACAGCCCAGTGTAACTTTTTAGGGCACAGAAATACTTGTTTTGATTCTAGTAATGAATTTATGCACTACAGTGTGATTTCATTGTACTGTGCATGTTGTATACACACAGACTTGCATTGTTTTAGGACTGATCATTTCCTCAAATCATTGTGTAAGTTCCATCCAAATCtgagttgctgtgtgtgtgtgctgtgattTGATGATGTCAATAAATAACTCTGTATGA

Function

NR:

description
uromodulin-like

GO: NA

KEGG:

id description
K18274 UMOD; uromodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948028.1 True 2126 mRNA 0.53 9 14112506 14118759

Neighbor

gene id symbol gene type direction distance location
LOC118936544 LOC106591784 coding downstream 10125 14060252 ~ 14102381 (-)
LOC100136331 LOC106591788 coding downstream 75223 14024955 ~ 14037283 (-)
LOC110485459 LOC106564320 coding downstream 115428 13959793 ~ 13997078 (-)
LOC118940568 NA coding downstream 183833 13928567 ~ 13928673 (-)
LOC118940567 NA coding downstream 186909 13925491 ~ 13925597 (-)
LOC110485491 LOC106564342 coding upstream 39624 14158383 ~ 14173729 (-)
gnav1 LOC106591843 coding upstream 72334 14191093 ~ 14229813 (-)
LOC118940023 pcy2 coding upstream 112162 14230921 ~ 14247448 (-)
LOC110487229 LOC106591833 coding upstream 151397 14270156 ~ 14275195 (-)
LOC110485493 LOC106592221 coding upstream 157103 14275862 ~ 14289159 (-)
G1422210 NA non-coding downstream 6260 14106046 ~ 14106246 (-)
G1422189 NA non-coding downstream 40399 14071589 ~ 14072107 (-)
G1422182 NA non-coding downstream 59981 14051039 ~ 14052525 (-)
G1422179 NA non-coding downstream 81658 14030274 ~ 14030848 (-)
G1422178 NA non-coding downstream 86360 14025657 ~ 14026146 (-)
G1422222 NA non-coding upstream 4883 14123642 ~ 14140587 (-)
G1422224 NA non-coding upstream 18379 14137138 ~ 14137833 (-)
G1422230 LOC106591798 non-coding upstream 26748 14145507 ~ 14146509 (-)
G1422201 sphm non-coding upstream 62469 14181228 ~ 14182097 (-)
G1422255 NA non-coding upstream 130159 14248918 ~ 14266303 (-)
LOC118940029 exosc1 other downstream 243835 13863439 ~ 13868827 (-)
G1422125 LOC106595916 other downstream 254256 13856876 ~ 13858250 (-)
LOC118940035 NA other downstream 331466 13772139 ~ 13781710 (-)
LOC110485508 LOC106564355 other downstream 477505 13628154 ~ 13644563 (-)
LOC110485498 LOC106592261 other upstream 176259 14293700 ~ 14343967 (-)
G1422757 NA other upstream 472707 14591466 ~ 14592594 (-)
G1422796 NA other upstream 646772 14765531 ~ 14768638 (-)
G1422891 LOC106601621 other upstream 807606 14907317 ~ 15353090 (-)

Expression


Co-expression Network