G1422230 (LOC106591798)


Basic Information

Item Value
gene id G1422230
gene name LOC106591798
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 14145507 ~ 14146509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1627896
TTTTGCTGCGTCAGGCCTCAAGATGGAGCGGGAGAATTTGAGAATGATCTTGGGTTTATTTTTGCTTCCCTTCAGACAGTGCTGATGTCTAGACACTAGTGATACCTGGCTAGAAACACTTTTGTTGTCAGCAGAGTTGTGTCCATTTCCTGTGGATTGTTTCTTTCCTCTGCTGGTGGTGTTTTTCTTCTTCGTTGGTTTTCTACCTGGTTTGTTGTTCTTCGGGTTGTTCTGGTTAAGTCTgggagcacagagagacagtTGATCCTTTGTCAGTCTGTGGAGTCTCAAGATGGGTAAAGAAACAGCAGCGGACATCTTGAGTTGATTCAGGTTAACGCTATGCAGAGAATCTCCTTCCTCCATCTTGAGTTGATTCAGATTAACGCTATGCAGAGAATCTCCTTCCTCCATCTTGAGTTGATTCAGGTTAACGCTATGCAGAGAATCTCCTTCCTCTATTTTGAGTTGATTCAGGTTAACGCTATACAGAGAATCTCCTTCCTCCATCTTGAGTTGATTCAGGTTAACGCTATGCAGAGAATCTCCTTCCTCCATTTTGAGTTGATTCATGTTAACGCTATACAGAGAATCTCCTTCCTCCATTTTGAGTTGATGTAGTTAACCTGGGCAGAGAAACTTGTTCTGTTAAACTATGCTGGTGCCATGTGGGTAACTGTGATGGCTTGTCTTCTCCTTATAAGACAGCTCTAGGCTGGTGCCATGTGGGTGACTGTGATGGCTTGTCTTCTCCTTATAAGAC

Function

NR:

description
uncharacterized protein LOC110485482

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1627896 True 763 lncRNA 0.44 3 14145507 14146509

Neighbor

gene id symbol gene type direction distance location
LOC110485476 LOC106564346 coding downstream 26748 14112506 ~ 14118759 (-)
LOC118936544 LOC106591784 coding downstream 43126 14060252 ~ 14102381 (-)
LOC100136331 LOC106591788 coding downstream 108224 14024955 ~ 14037283 (-)
LOC110485459 LOC106564320 coding downstream 148429 13959793 ~ 13997078 (-)
LOC118940568 NA coding downstream 216834 13928567 ~ 13928673 (-)
LOC110485491 LOC106564342 coding upstream 11874 14158383 ~ 14173729 (-)
gnav1 LOC106591843 coding upstream 44584 14191093 ~ 14229813 (-)
LOC118940023 pcy2 coding upstream 84412 14230921 ~ 14247448 (-)
LOC110487229 LOC106591833 coding upstream 123647 14270156 ~ 14275195 (-)
LOC110485493 LOC106592221 coding upstream 129353 14275862 ~ 14289159 (-)
G1422222 NA non-coding downstream 4920 14123642 ~ 14140587 (-)
G1422224 NA non-coding downstream 7674 14137138 ~ 14137833 (-)
G1422210 NA non-coding downstream 39261 14106046 ~ 14106246 (-)
G1422189 NA non-coding downstream 73400 14071589 ~ 14072107 (-)
G1422182 NA non-coding downstream 92982 14051039 ~ 14052525 (-)
G1422201 sphm non-coding upstream 34719 14181228 ~ 14182097 (-)
G1422255 NA non-coding upstream 102409 14248918 ~ 14266303 (-)
G1422260 NA non-coding upstream 105776 14252285 ~ 14262233 (-)
G1422257 NA non-coding upstream 120330 14266839 ~ 14267421 (-)
G1422266 NA non-coding upstream 122176 14268685 ~ 14268959 (-)
LOC118940029 exosc1 other downstream 276836 13863439 ~ 13868827 (-)
G1422125 LOC106595916 other downstream 287257 13856876 ~ 13858250 (-)
LOC118940035 NA other downstream 364467 13772139 ~ 13781710 (-)
LOC110485508 LOC106564355 other downstream 510506 13628154 ~ 13644563 (-)
LOC110485498 LOC106592261 other upstream 148509 14293700 ~ 14343967 (-)
G1422757 NA other upstream 444957 14591466 ~ 14592594 (-)
G1422796 NA other upstream 619022 14765531 ~ 14768638 (-)
G1422891 LOC106601621 other upstream 779856 14907317 ~ 15353090 (-)

Expression


Co-expression Network