XLOC_033437 (prkd4)


Basic Information

Item Value
gene id XLOC_033437
gene name prkd4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 6879534 ~ 6908640 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065460
TAAGGCTCTGGAGTGCAGTGTTGCTGGTCTGTCAGAGAAGCTGCTGTTATTCAGACATGAGCCGAACTCAGAGCAGATCCTGCACAGACTCACTGAGAAACACGACATCCATGATGGAGATCTGCTGGAGGTGGTGCTCGCTGGCACAGCTTCAGTGACAGAGACAAAGTACCGCCCACATTCACTGTCCGTCCAATCGTATCGCACGCCGACCTTCTGTCACCACTGTGGAGAGATGCTGTGGGGTCTTGTCCGACAGGGACTCAAGTGTGACGGCTGTGGTCTGGACTTCCACAAGCGATGTGCTCTCAGGTTACCCAACGACTGCTCTCGTGTGTATCGGCGCTGTGGGCCGAGTCTCTCCCTGCTCCCCCCGGGCCGACCGCGTGCCCCATCGCTCTCCATACACACCGGCGGGAGTCTGGAGGAGATCAGCTTGTCGAAGCCGATGCGCTCACGGCCACCGTCCTTGGCCGATGTGTCGGTGAGTGTGGGTATGTCCGAGGGGAAGGAGGGGCGACCGCGGGTCCCTCACACCTTCCACATCCACACCTACACCAAACCAACCGTCTGCCAGCACTGCTTCCGCCTGCTCAAGGGCCTCTTCAGACAGGGCCTGCAGTGCTCCGACTGTAAGTTTAACTGTCATCGCCGCTGTCAGGCTCTCGTTCCCCCTGAATGTCGAGGTGAAAGAGCAAACGGAGAAGACAGTGACGCTGGTCAGGAATCAGAGGAAAACGTGGCTGTGGAGTCAGTAAACGCTCTCTATGAGGAGCTGCGCTATAAAGACCCACCGCTGGAGCAGCTGATGCCACCGCAGATGCCTGTCacgCCGTGTTTCAGCAGTAATATCCCTCTGATGCGAGTGGTGCAGTCGGTCAAACACAGCAAGAGAAGAGGCAGCGGAGTGTTGAAGAAGGGCTGGTTAATCCACAACACCAGCACCGACACACTGAAAAAACGTCACTACTGGGTGTTGGATGGGAAAAGCATCACCCTGTACCCCAATGAAAACACCAGCAAGTACTATAAGgagaTCTCCCTGTCGGAGGTGCTGCAGGTTCGAGGAGCAGATCAGATTAGCGGCGATCACTCATTGGAGCTGCAGACGGGCTCTCTGGTGTACTGTGTGTTTGCTGAACAGGACGGTCCGGCGTGGGAATCGGCCCTCAAGCTGGCCCTTAGACCCGTTCAGGGCTCCACAGCAGAGGACTCAGAGGAGAACGGTGATGAAAAGAATGGAGACAATAGTCAGgacatcaGCGAGCTCTACCAGATCTTCTCGGATGAGGTTTTGGGTTCGGGTCAGTTTGGTGTGGTTTACGGAGGGACACACAGACAGACGGGACGACCAGTCGCTATTAAAGTCATCGATAAAACACGATTCCCCTCCAAACAGGAGCAACAGACCAAAAATGAGGTCGCAATACTCCAGaggctGTCTCATCCAGCAGTCATTCACTTGGAAGGCATGTTCGAGACTAAGGAATACACGTTTGTAGTGATGGAGAAGCTCCACAGCGACATGCTGGAAATGATTTTATCTCATGAGAACGGACGTCTGCCCGAACGCAACACTCGCTTCCTGGTCACTCAGGTTTTGGAGGCACTGCGGTATCTACACATGAGGAATATCGCACACTGTGACCTGAAGCCTGAAAACGTGCTGCTCGCTTCACCTGAACCCTTTCCTCAGGTCAAACTTTGTGACTTCGGCTTCGCCCGTATCATCGGAGAAAAGTCATTTCGGCGCTCTATTGTGGGCACGCCGGCCTATCTGGCGCCCGAGGTCATCAATAATCACGGCTATAACCGCTCTCTGGACACGTGGGCGGTCGGCGTGATCTTATACGTCAGTCTGAGCGGGACGTTTCCCTTCAATGAGGACGAGGACATCAATCAGCAGATCACCAACGCCTCCTTCATGTACCCACGCCAGCCGTGGTCCCTCATCTCGCTGGAGGCGGTGAACCTGATCAATAACCTGCTGCAGGTGGTGGTCAGACGTAGGTTCAGTGTCGGCAAAGCAATGGGTCATCCGTGGTTTCAGAACTTCCAGCTGTGGTGTGACCTGCGAGAGTTTGAGCTGCGTATGGGTTATCGATATCTCACGCACGAGTCCGACGACAGCCACTGGAGAGCCTACGCTCAGGAGAAAAGACTCAGTTTCCCAGAACACCTTGCTGAAGCAGCAGAGCAGCAGACGCCGGCCTCGTAGATCTGACATCACTGTGAATACTGTATTATATGAACATCATATCAGTCTGACTATGTACATCTTATTATGGTTCTAaatcattttcaataaattaagAAAAG

Function

symbol description
prkd4 Predicted to enable ATP binding activity and calcium-dependent protein kinase C activity. Predicted to be involved in protein kinase D signaling. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be located in membrane.

GO:

id name namespace
GO:0089700 protein kinase D signaling biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-93 Predicted to enable ATP binding activity and calcium-dependent protein kinase C activity. Predicted to be involved in protein kinase D signaling. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be located in membrane.

Ensembl:

ensembl_id ENSDARG00000104153

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065460 True 2319 mRNA 0.54 16 6879534 6908640

Neighbor

gene id symbol gene type direction distance location
XLOC_033436 sf3b2 coding upstream 78845 6756206 ~ 6800689 (+)
XLOC_033435 CU459024.1 coding upstream 181443 6697973 ~ 6698091 (+)
XLOC_033434 pnp5a coding upstream 211110 6652967 ~ 6668424 (+)
XLOC_033433 si:cabz01036022.1 coding upstream 357777 6480212 ~ 6521757 (+)
XLOC_033432 FP340257.1 coding upstream 440994 6420435 ~ 6438540 (+)
XLOC_033438 ccs coding downstream 6969 6915609 ~ 6932033 (+)
XLOC_033439 rbm14b coding downstream 32943 6941583 ~ 7043133 (+)
XLOC_033440 actn3b coding downstream 61269 6969909 ~ 7133475 (+)
XLOC_033441 ccs coding downstream 81870 6990510 ~ 7011961 (+)
XLOC_033442 gal3st3 coding downstream 243192 7151832 ~ 7249789 (+)
XLOC_033429 NA non-coding upstream 626873 6249392 ~ 6252661 (+)
XLOC_033428 NA non-coding upstream 822172 6053845 ~ 6057362 (+)
XLOC_033416 NA non-coding upstream 932407 5943810 ~ 5947127 (+)
XLOC_033406 NA non-coding upstream 1052034 5826581 ~ 5827500 (+)
XLOC_033443 NA non-coding downstream 357042 7265682 ~ 7275388 (+)
XLOC_033444 NA non-coding downstream 367211 7275851 ~ 7279896 (+)
XLOC_033446 NA non-coding downstream 511572 7420212 ~ 7422923 (+)
XLOC_033450 NA non-coding downstream 646120 7554760 ~ 7563288 (+)
XLOC_033453 CABZ01030292.1 non-coding downstream 863525 7772165 ~ 7772378 (+)

Expression


Co-expression Network