Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_033438 |
| gene name | ccs |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 6915609 ~ 6932033 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| ccs | Predicted to enable copper ion binding activity. Predicted to be involved in removal of superoxide radicals. Predicted to act upstream of or within metal ion transport and superoxide metabolic process. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human CCS (copper chaperone for superoxide dismutase). |
| id | name | namespace |
|---|---|---|
| GO:0030001 | metal ion transport | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0006801 | superoxide metabolic process | biological_process |
| GO:0019430 | removal of superoxide radicals | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0004784 | superoxide dismutase activity | molecular_function |
| GO:0005507 | copper ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| ko05014 | Amyotrophic lateral sclerosis |
| ko05022 | Pathways of neurodegeneration - multiple diseases |
| id | description |
|---|---|
| ZDB-GENE-050417-322 | Predicted to enable copper ion binding activity. Predicted to be involved in removal of superoxide radicals. Predicted to act upstream of or within metal ion transport and superoxide metabolic process. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human CCS (copper chaperone for superoxide dismutase). |
| ensembl_id | ENSDARG00000116246 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00065461 | True | 879 | mRNA | 0.56 | 8 | 6915609 | 6932033 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_033437 | prkd4 | coding | upstream | 6969 | 6879534 ~ 6908640 (+) |
| XLOC_033436 | sf3b2 | coding | upstream | 114920 | 6756206 ~ 6800689 (+) |
| XLOC_033435 | CU459024.1 | coding | upstream | 217518 | 6697973 ~ 6698091 (+) |
| XLOC_033434 | pnp5a | coding | upstream | 247185 | 6652967 ~ 6668424 (+) |
| XLOC_033433 | si:cabz01036022.1 | coding | upstream | 393852 | 6480212 ~ 6521757 (+) |
| XLOC_033439 | rbm14b | coding | downstream | 9550 | 6941583 ~ 7043133 (+) |
| XLOC_033440 | actn3b | coding | downstream | 37876 | 6969909 ~ 7133475 (+) |
| XLOC_033441 | ccs | coding | downstream | 58477 | 6990510 ~ 7011961 (+) |
| XLOC_033442 | gal3st3 | coding | downstream | 219799 | 7151832 ~ 7249789 (+) |
| XLOC_033443 | NA | coding | downstream | 333649 | 7265682 ~ 7275388 (+) |
| XLOC_033429 | NA | non-coding | upstream | 662948 | 6249392 ~ 6252661 (+) |
| XLOC_033428 | NA | non-coding | upstream | 858247 | 6053845 ~ 6057362 (+) |
| XLOC_033416 | NA | non-coding | upstream | 968482 | 5943810 ~ 5947127 (+) |
| XLOC_033406 | NA | non-coding | upstream | 1088109 | 5826581 ~ 5827500 (+) |
| XLOC_033444 | NA | non-coding | downstream | 343818 | 7275851 ~ 7279896 (+) |
| XLOC_033446 | NA | non-coding | downstream | 488179 | 7420212 ~ 7422923 (+) |
| XLOC_033450 | NA | non-coding | downstream | 622727 | 7554760 ~ 7563288 (+) |
| XLOC_033453 | CABZ01030292.1 | non-coding | downstream | 840132 | 7772165 ~ 7772378 (+) |
