RNA id: TCONS_00065461


Basic Information

Item Value
RNA id TCONS_00065461
length 879
RNA type mRNA
GC content 0.56
exon number 8
gene id XLOC_033438
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 6915609 ~ 6932033 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTATCAACGTGCGATCTGAGGATGGACACAAACAGAGCAGCGAAGCTTGAGTTTGCGGTGCAGATGTCATGTGACAGCTGTGTTAATGCAGTAAAGGCCGTCCTGGAGAAAGATCCAGgagtgCAGTCAGTGCAGGTAAACCTGTCTAAGGAGGAGGTTTTGGTGGAAACGGCTCTGACGTCTCTTCAGGTCCAGACTCTGATCGAGAGCACCGGCAGACGAGCCGTGCTGAAGGGAATGGGAGGATCAGACTCAGACCTGGGGGCTGCCGTGGCAATGCTGAGTGGGGCGGGGCTTGTCCAGGGCGTGGTCAGATTCCTGCAGCTGTCACAAGACCGCTGTTTGATTGACGGGACGATCGACGGACTGAGCCCTGGGGCTCACGGTCTGCATGTGCATGAACTGGGGGATCTCACACAGGACTGCAGGAGTTGTGGAGATCATTTCAATCCATTCAGGAAGCAGCATGGAGCTCCACAGGACTCTGACAGGCATGTTGGGGATCTGGGAAACATCAGCGCTGGTCCAGACGGCAGAGCTTCATTCAGACTGGAGGACTCTCAGATCAAGGTATGGGATGTGATCGGACGCTCTCTGGTGGTGGATTCAGGAGAGGATGATCTGGGTCGAGGGAATCACCCGCTGTCCAAAACCACTGGAAACTCCGGAGAAAGACTAGCATGTGGGATCATCGCTCGCTCCGCCGGGCTCTTTCAGAACCCCAAGCAGATCTGTGCCTGCGACGGAGTGACGCTGTGGGAGGAGAGAGACCGTCCCATCGCCGGCAGAGGACGCAGAGTCGAAACACACACCTCTCATCTGTGAccattgcacacacacacgcgaccAGAAGGAGATTATTCCTGACCAATGAGAGC

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0019430 removal of superoxide radicals biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004784 superoxide dismutase activity molecular_function
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis
ko05022 Pathways of neurodegeneration - multiple diseases

ZFIN:

id description
ZDB-GENE-050417-322 Predicted to enable copper ion binding activity. Predicted to be involved in removal of superoxide radicals. Predicted to act upstream of or within metal ion transport and superoxide metabolic process. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human CCS (copper chaperone for superoxide dismutase).

Ensembl:

ensembl_id ENSDART00000159213

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068550 lncRNA upstream 662948 6249392 ~ 6252661 (+) True XLOC_033429
TCONS_00068770 lncRNA upstream 672179 5978658 ~ 6243430 (+) True XLOC_033427
TCONS_00068549 lncRNA upstream 858247 6053845 ~ 6057362 (+) True XLOC_033428
TCONS_00068548 lncRNA upstream 968482 5943810 ~ 5947127 (+) True XLOC_033416
TCONS_00068547 lncRNA upstream 1088109 5826581 ~ 5827500 (+) True XLOC_033406
TCONS_00068771 lncRNA downstream 333649 7265682 ~ 7275388 (+) True XLOC_033443
TCONS_00068772 lncRNA downstream 343818 7275851 ~ 7279896 (+) True XLOC_033444
TCONS_00068773 lncRNA downstream 380673 7312706 ~ 7315975 (+) True XLOC_033445
TCONS_00068774 lncRNA downstream 488179 7420212 ~ 7422923 (+) True XLOC_033446
TCONS_00068775 lncRNA downstream 622727 7554760 ~ 7563288 (+) False XLOC_033450
TCONS_00065460 mRNA upstream 6969 6879534 ~ 6908640 (+) True XLOC_033437
TCONS_00065459 mRNA upstream 115045 6756273 ~ 6800564 (+) True XLOC_033436
TCONS_00065456 mRNA upstream 247185 6652967 ~ 6668424 (+) True XLOC_033434
TCONS_00065455 mRNA upstream 393852 6480212 ~ 6521757 (+) True XLOC_033433
TCONS_00065454 mRNA upstream 477069 6420435 ~ 6438540 (+) True XLOC_033432
TCONS_00065463 mRNA downstream 9550 6941583 ~ 7035227 (+) False XLOC_033439
TCONS_00065462 mRNA downstream 9550 6941583 ~ 7035227 (+) False XLOC_033439
TCONS_00065464 mRNA downstream 37876 6969909 ~ 7133475 (+) False XLOC_033440
TCONS_00065465 mRNA downstream 58477 6990510 ~ 7011961 (+) True XLOC_033441
TCONS_00065466 mRNA downstream 87878 7019911 ~ 7043133 (+) False XLOC_033439
TCONS_00065458 other upstream 114920 6756206 ~ 6800689 (+) False XLOC_033436
TCONS_00065457 other upstream 217518 6697973 ~ 6698091 (+) True XLOC_033435
TCONS_00065428 other upstream 1345415 5569548 ~ 5570194 (+) False XLOC_033402
TCONS_00065420 other upstream 1725713 5189778 ~ 5189896 (+) True XLOC_033396
TCONS_00065416 other upstream 1916338 4998793 ~ 4999271 (+) True XLOC_033393
TCONS_00065469 other downstream 116223 7048256 ~ 7093901 (+) True XLOC_033440
TCONS_00065483 other downstream 840132 7772165 ~ 7772378 (+) True XLOC_033453
TCONS_00065484 other downstream 846930 7778963 ~ 7779176 (+) True XLOC_033454
TCONS_00065492 other downstream 1496921 8428954 ~ 8429919 (+) True XLOC_033460
TCONS_00065497 other downstream 1738432 8670465 ~ 8681181 (+) True XLOC_033464

Expression Profile

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