RNA id: TCONS_00068547


Basic Information

Item Value
RNA id TCONS_00068547
length 758
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id XLOC_033406
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 5826581 ~ 5827500 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agcacgactgactgaagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctcacaaaaccaaaacagacgtgataaaattccagatgtaaacacatttgaccttcctttggccaatttgatttggaaaagcttgaaaatcaactaaaggagcagcccgaacaaatgaagaaactgatggagtgaggacaaatgtccataccacgccactgataaagaagtggaaaaatgcattacaaggtagctacaacttgcccctgacagggatggaggaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttattttttaaacaacattttaagtgtattaggatgttccctgatacttgaacaatttgtttctttcatttgcatttatatatatatatatatatatatatatatgtatatgtatatatatgtgtgtatgtgtgtgtgtatatatgtatggtatgtaggtatgtatgtatgtgtgtgcgccaaattctgaagaaacatcttgatacatttttaataaacgtaatacaaataaaattataaatataaaattgcacaagacgtgtatatatatgaaatgtataatcatctcactcatgtcttgctgtttgtgcaattgattttgttcaagtttatttcaaaataagtttgactttatacttctgcaattatttatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0010604 positive regulation of macromolecule metabolic process biological_process
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0048519 negative regulation of biological process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068544 lncRNA upstream 8205 5814145 ~ 5818376 (+) False XLOC_033405
TCONS_00068545 lncRNA upstream 8205 5814174 ~ 5818376 (+) False XLOC_033405
TCONS_00068769 lncRNA upstream 8205 5814953 ~ 5818376 (+) False XLOC_033405
TCONS_00068546 lncRNA upstream 9604 5814989 ~ 5816977 (+) True XLOC_033405
TCONS_00065430 lncRNA upstream 42428 5737873 ~ 5784153 (+) True XLOC_033404
TCONS_00068548 lncRNA downstream 116310 5943810 ~ 5947127 (+) True XLOC_033416
TCONS_00068770 lncRNA downstream 151158 5978658 ~ 6243430 (+) True XLOC_033427
TCONS_00068549 lncRNA downstream 226345 6053845 ~ 6057362 (+) True XLOC_033428
TCONS_00068550 lncRNA downstream 421892 6249392 ~ 6252661 (+) True XLOC_033429
TCONS_00068771 lncRNA downstream 1438182 7265682 ~ 7275388 (+) True XLOC_033443
TCONS_00065427 mRNA upstream 254335 5566582 ~ 5572246 (+) False XLOC_033402
TCONS_00065423 mRNA upstream 277277 5530154 ~ 5549304 (+) False XLOC_033399
TCONS_00065424 mRNA upstream 277543 5541747 ~ 5549038 (+) True XLOC_033399
TCONS_00065422 mRNA upstream 290398 5529967 ~ 5536183 (+) False XLOC_033399
TCONS_00065421 mRNA upstream 305769 5494565 ~ 5520812 (+) False XLOC_033398
TCONS_00065431 mRNA downstream 76520 5904020 ~ 5904598 (+) True XLOC_033407
TCONS_00065432 mRNA downstream 77591 5905091 ~ 5905740 (+) True XLOC_033408
TCONS_00065433 mRNA downstream 78827 5906327 ~ 5906995 (+) True XLOC_033409
TCONS_00065434 mRNA downstream 80577 5908077 ~ 5908583 (+) True XLOC_033410
TCONS_00065435 mRNA downstream 81771 5909271 ~ 5909676 (+) True XLOC_033411
TCONS_00065428 other upstream 256387 5569548 ~ 5570194 (+) False XLOC_033402
TCONS_00065420 other upstream 636685 5189778 ~ 5189896 (+) True XLOC_033396
TCONS_00065416 other upstream 827310 4998793 ~ 4999271 (+) True XLOC_033393
TCONS_00065411 other upstream 860244 4966092 ~ 4966337 (+) True XLOC_033390
TCONS_00065402 other upstream 944894 4880423 ~ 4881687 (+) False XLOC_033375
TCONS_00065457 other downstream 870473 6697973 ~ 6698091 (+) True XLOC_033435
TCONS_00065458 other downstream 928706 6756206 ~ 6800689 (+) False XLOC_033436
TCONS_00065469 other downstream 1220756 7048256 ~ 7093901 (+) True XLOC_033440
TCONS_00065483 other downstream 1944665 7772165 ~ 7772378 (+) True XLOC_033453
TCONS_00065484 other downstream 1951463 7778963 ~ 7779176 (+) True XLOC_033454

Expression Profile

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