RNA id: TCONS_00065456


Basic Information

Item Value
RNA id TCONS_00065456
length 3076
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_033434
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 6652967 ~ 6668424 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGAAACGGAGGCTCTATAAGAATACCGGCTACGAGAGCGACGCTTCAGgaattttaaatcattttcacTTGAGTGTTCAACCGTTACACCGACGAcggttttttatttaaatttccgtTATTCGTTTCTCCGGTGCTTCGTCGGATATTTTATTCACATCTGCCGCTTTAGAAACACTGAAATTTCCGTTCTGCACTGTTCAAGGACCAAAGCAGCGACTTGAATCATGTTTCCCGAGAGCAACACTGGGTACAGTTTCGAGGATTGCCAGGCCaccgctgattggctcctgtccCAGACTGCAGTGCGCCCTCTGGTGGGCATCGTGTGTGGTTCGGGTTTGGGTGGATTGGCTGATGCTCTGAAAGACCAGGTGGCCTTCAACTACCGGGACATTCCTAACTTTCCCCAGAGTACAGTTCACGGTCATGCGGGTCGGCTGGTGTTTGGCACTTTAAAGGGCAGGCCGTGTGTCTGCATGCAGGGACGCTTTCATCTCTATGAAGGATATCCCATCCAGAAGATTACGATGCCGATGCGGATTTTCAAGATGCTGGGTGTGGAGACGGTGATTCTTACCAACGCTGCTGGCGGTCTGAACCAGGACTATAAAGTAGGAGACATCATGATCATCAAAGACCACCTCAACATGCCCGGATTCGCTGGAAACAACCCTCTGGCGGGACACAACGACGAAAGGTTTGGAGTGCGTTTCCCCTGCATGTCTGACGCGTATGATCGAGAGCTGCAGCAGATGGCTCTGGATGTGGGATCAGAGCTgggcttcagtgatttcctgcGGGAGGGGGTTTACTGTGTTCTTGGAGGACCGTCATTCGAGACCATCGCTGAGTGCCGCATGCTGCACAAACTGGGTGCTGACGCTGTCGGCATGAGCACAGTTCATGAGGTGATCGTAGCCCGTCACTGCGGGATGCGCGTCTTCGCTCTGTCTTTGATAACCAATAAAGCAGTTATGGATTACGACAGCGAGGAAAAAGCCAACCATGAGGAGGTCCTGCAGACGGGCAAACAGCGAGCGGAGCAGCTGGAGAGACTGGTGTCTACTATTATTACCCGGCTGGAGCACAACAACAACTACGCCTAAAACCGCTCAGGGCGGAAAATACCTGCTGCTCAACTGCCATTATTATGACGCACTGTTGGAGAAACTAGCAAGATTGtcctagaagggatacagctgcggccagaagttaacaataattattaatattatttattaaattacctattaaattgtattttattaacatctaccccaagaCTAGTCAACTCTTACtctaatgtaaaaaatattgttgtacagtgtcataaaaatgaaGCTATATCGATGTgcatccacagctgtatcccttccaGACATCATGTTTCTTTCTCAAACAGTGTTGCACATCAGATCCAACATTAATCACAGACCAAAGAACATACAGAACTCAtctgtgaacacaaaacaaatggTTGTTGTTTCAGAAACCATGTTTTACAGGTCAATTCCATTCAGctgatgtttatttatgtttattgaatCTTCTTTTACAGCGCAATTCTgtcagggtgcgaattatacatgGACAACTGTTCAATGGGGCCAAATTGTTTGGTTATATTAGTTTGTTAAATACATGTTTCATTAAATCagatgcatgtatttatttaaattacaaatagaccattttgagggatgtaaacaaaaacaaccgtcccaacatatttcctgttttacattttccaTTTTTACAGCTTCCGATAATCCAAATGttgccacatattgataaataatgttttgataactgttttaacattatttcaaTTCAATCATAATAATTCAATCATAACATAATGTTATAATAGCTGTTTTAACGTTATGATTGAATtattattgaatttaattgaaataatgttataatagctgttttaacattatgattgaattattattgaatttaattgaaataatattataatagctgttttaacattatggTTGAAttgaaataatgttatgataacaataagttatgattgaattgtctcTTGTTGCAGTTATGAATTAGTTTGATGactacattgaaatggtctatattttaataagtcgtgattaattttttgttttgaggGTTATTTAGCGTTCAGTAACCTCATTTCagaggtcaaactatacaaattatttttaatttaactttatttaaggTTATATGTTgatacaaacacctattttacgaGAAAAGTGTCTTCTGAATACTCACGATGTCCGTTGGTGCTCTTCATCTGCCGGTGTCAGACGGTTGAAATGGCGCGATTATGAATGGTATGACCCGTTATAGGGGtgttcaaatgtatatttatattatctattattttaattattaatatcattattaaaagAGACGCATGAGAGATAACTAATGCTTACTATTAAAGGTCTGACTCCTGTACATTGTTTTGACGTCCTTTAGAGGGGGCTCATGAGTTATTCAGGAAAGTCCGTTCCTTAAAACCACCCCTGTGATTCGCACCCTGAATAGTTTCAGTCTTCATTGGTGTTCGGTCTGGTTAATATTTAGCTCTTATGTATATAGACTCGGTCAACAGGATAGtgcttatgttttgtttttcatttaaaagtaataataataattgttacatTCCTTTGAATGCTAATGTTTCTTATTTCTAACTTGACGTTTACAATTTTGCAGGTGTTTTAATTCTAAGAGATTGAATCGTCTGTAAAGCTTCAAATTCTTTGTAGTGTTTGTCTGAAGATGTACagtaaaatatcatcttttttaacattattagtaTAAttggctatttattatttatgtctcCATCTCGTTTATGGTGTGAGTTTTGTGTACaacacatttttgggtgaactatttgtCAAAAAATGCTTGTCATATTTCTACAGAGCCATTGAAAGAAAGATGACATGGGGAAATACATGAGATGTCAGTTGAAATTACATCTCGGTGCTTTTTCTAAACTTTTGGATCCCCCTACAAACTTGTCATGCAaaagcatttaataaatatagattttttgtcACA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2553 Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

Ensembl:

ensembl_id ENSDART00000102681

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068550 lncRNA upstream 400306 6249392 ~ 6252661 (+) True XLOC_033429
TCONS_00068770 lncRNA upstream 409537 5978658 ~ 6243430 (+) True XLOC_033427
TCONS_00068549 lncRNA upstream 595605 6053845 ~ 6057362 (+) True XLOC_033428
TCONS_00068548 lncRNA upstream 705840 5943810 ~ 5947127 (+) True XLOC_033416
TCONS_00068547 lncRNA upstream 825467 5826581 ~ 5827500 (+) True XLOC_033406
TCONS_00068771 lncRNA downstream 597258 7265682 ~ 7275388 (+) True XLOC_033443
TCONS_00068772 lncRNA downstream 607427 7275851 ~ 7279896 (+) True XLOC_033444
TCONS_00068773 lncRNA downstream 644282 7312706 ~ 7315975 (+) True XLOC_033445
TCONS_00068774 lncRNA downstream 751788 7420212 ~ 7422923 (+) True XLOC_033446
TCONS_00068775 lncRNA downstream 886336 7554760 ~ 7563288 (+) False XLOC_033450
TCONS_00065455 mRNA upstream 131210 6480212 ~ 6521757 (+) True XLOC_033433
TCONS_00065454 mRNA upstream 214427 6420435 ~ 6438540 (+) True XLOC_033432
TCONS_00065453 mRNA upstream 258301 6385664 ~ 6394666 (+) True XLOC_033431
TCONS_00065452 mRNA upstream 313390 6317866 ~ 6339577 (+) True XLOC_033430
TCONS_00065451 mRNA upstream 674244 5977707 ~ 5978723 (+) False XLOC_033427
TCONS_00065459 mRNA downstream 87849 6756273 ~ 6800564 (+) True XLOC_033436
TCONS_00065460 mRNA downstream 211110 6879534 ~ 6908640 (+) True XLOC_033437
TCONS_00065461 mRNA downstream 247185 6915609 ~ 6932033 (+) True XLOC_033438
TCONS_00065463 mRNA downstream 273159 6941583 ~ 7035227 (+) False XLOC_033439
TCONS_00065462 mRNA downstream 273159 6941583 ~ 7035227 (+) False XLOC_033439
TCONS_00065428 other upstream 1082773 5569548 ~ 5570194 (+) False XLOC_033402
TCONS_00065420 other upstream 1463071 5189778 ~ 5189896 (+) True XLOC_033396
TCONS_00065416 other upstream 1653696 4998793 ~ 4999271 (+) True XLOC_033393
TCONS_00065411 other upstream 1686630 4966092 ~ 4966337 (+) True XLOC_033390
TCONS_00065402 other upstream 1771280 4880423 ~ 4881687 (+) False XLOC_033375
TCONS_00065457 other downstream 29549 6697973 ~ 6698091 (+) True XLOC_033435
TCONS_00065458 other downstream 87782 6756206 ~ 6800689 (+) False XLOC_033436
TCONS_00065469 other downstream 379832 7048256 ~ 7093901 (+) True XLOC_033440
TCONS_00065483 other downstream 1103741 7772165 ~ 7772378 (+) True XLOC_033453
TCONS_00065484 other downstream 1110539 7778963 ~ 7779176 (+) True XLOC_033454

Expression Profile

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