RNA id: TCONS_00065463


Basic Information

Item Value
RNA id TCONS_00065463
length 2257
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_033439
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 6941583 ~ 7043133 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCTATAACAAAATTGTGTACTTTGATTTAAATTTGTACTGTAAGATTCCTTGCATATATATActctttaatgtttttatatcTTTAACCAAGTACTTTATGTAGTTAACAATCCTTAATATTTTACCTTAAAAACACAGTAGGAGTAAGACTAGACTCTTCAGTATGGGTGTGAGATGTGTATGTTAGTACTAAGTTTGTTCATATTTCATAATTAATATTTCCTCCAAACACGGAAGCAGATGCTCAGCCCTTTATTTGAAGatgaccaaaacaaacacatttgtgtgtgtgtgtggattaatTTGCACTAATTAATTATTCACCGTGACATAGTAAGATAAAcgttgtgatttatttttatttccattgTACTTTAAGACTCCTTGCAAGTATACTTTTACATTTCTTTATAATTTTTGACCAAGTACATTACTATAAGTGAACAATTTGTTGTAGTTTAACTTGAAAACACAGCAGACTAGACCCTTCAGTATGGGCGCGCGCATCAGCATGCAAAAGAATGAGCGATTCTGAAGAACGGAAGTGGACCGACCATTTTGAAACCCCGCACCGCCTAGCACAATGGATAAGGGCCACACGGTTAAGCTCTTCGTAGGGAATCTGGCCTTGGACACCACACAAGAAGAACTTTCTGCCATTTTTGAGTCATATGGACAGGTGGTGAGCTGCAGCGTGTTGCGGCAGTTCGCTTTCGTACACCTGCAGGGAGAGGGCGCTGCTGAGCGGGCCATCCGGGAGCTTAATGGCCGCGAGTTTAAAGGCCGTAACCTGGTGGTGGAGGAGTCCCGAGGACGTCCACTCCACTCAACCAAGGTGTTTGTGGGTAATCTGAGCAGCATGTGCACAACCGAAGACCTCCAGGAGCTGTTTCAGACCTTTGGAAAAGTTTTGGAGTGCGATAAAGTGAAAGGTTATGCCTTTGTACACATGGAGAACAAGGAAGATGCACTACAGGCTATTGAAGCACTGCACGGGACATCCTTCAAAGGACGACCGCTATCGGTGGAGCTCTCAAAAGTTCAGCCAAGCAAGCAGACTCCCACTGGGAAAATCCCATGTGTAAGCTGCGGTAAACAGGGTCACTATGCAGGTGAATGTCCAGCTGGTAAACCCACCCTGGAGCAGTACCAAAGCCAAGCTGCTGTGTTAGCAGctgccgctgctgctgctgccggCCTTCCACTGCAGGTACAACAGAGCGTCCACAATTCAGTCTACAACACCTCCACCTTTGACCCCACCTACGCTGCTCTGACTGGACTCACAGCTGCCGGTGCACGGGCAGAAGGTGGAGCCGCCGTGGCACCAGCTGTCTATGGAGCGCTAGCTAGTCAAGTGTACGGGACAGCGGTTGCCAATCAGCTCTACGGTGGGTCGGTTGCAAATCAAGCGCTGAACAGTAGTGCGGCTGCAGCTGCGGCGCAAGCCTATGGCACTGTTAACCCTGCGCTGTACGGGCAGATGACCAGCGGTGCGGTCGCGGCGGCAGCAGCAGCTGCTGCTGCATATGGTCCACAGGTTTACACACAAGCAGTAGGAAATCCAGTTTTCCTAACTGCAGCACCAAGTATGGAGGTACCGGCTGGCGCCGCTGCCGTTAACCCAGCGTATACGGTAGCACCGGCTCTCTACAGTGCAACCCCAGCTTATGGGGCTCTGGGGGCTGCTGACCCAGCAGCTATCTTTGAGGCAGCAAGGGCGCACTACTTTGCACAAGGACAGCAAGTGCTTGCAGAACAGCAACAGGCCAGCTCAAAGTCTGGAGAGAGGGACCGGAGTCCTCTAAGAAGATCTGCGCCTCTACTGCCAGACCCCGTCATGAAACCGTTTATATATCAGCGGGCCAAGCGCAGAGCCCTGTTGCCTACACCAGCGGGCCGCGAAGAAGCCGCCGCACAGGAGGACGACCCTGTAGCCAGATACTATGCGGAGTACTACCAGCAGTACCAGCAGCTGCAGCAGTATCCTCAGTACCAGTACGCGTACCCCGCTCACAGCGCACTCGCGGCCATGTCCGCGCTGCAATCTCTGCCCGGTGTGTCAGCTCAGCAGGTGGCGACGCTCGACTCGCTCAGGCCAGTGCTGCCCGCCGCCCCCGTGCCTGCCGCTGCCGCCATCGCCATGGCAACACCCCGCGTGTATGAGCCACCGCCGATTCCGCCGTCGCACAAGGAGCCCCTCCTCCGCCGCCCCGAACTCGCCCTACACACCCCTGAAACACCCTTCCGATAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2455 Predicted to enable RNA binding activity and zinc ion binding activity. Acts upstream of with a negative effect on BMP signaling pathway. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to several human genes including RBM14-RBM4 (RBM14-RBM4 readthrough).

Ensembl:

ensembl_id ENSDART00000160709

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068550 lncRNA upstream 688922 6249392 ~ 6252661 (+) True XLOC_033429
TCONS_00068770 lncRNA upstream 698153 5978658 ~ 6243430 (+) True XLOC_033427
TCONS_00068549 lncRNA upstream 884221 6053845 ~ 6057362 (+) True XLOC_033428
TCONS_00068548 lncRNA upstream 994456 5943810 ~ 5947127 (+) True XLOC_033416
TCONS_00068547 lncRNA upstream 1114083 5826581 ~ 5827500 (+) True XLOC_033406
TCONS_00068771 lncRNA downstream 230455 7265682 ~ 7275388 (+) True XLOC_033443
TCONS_00068772 lncRNA downstream 240624 7275851 ~ 7279896 (+) True XLOC_033444
TCONS_00068773 lncRNA downstream 277479 7312706 ~ 7315975 (+) True XLOC_033445
TCONS_00068774 lncRNA downstream 384985 7420212 ~ 7422923 (+) True XLOC_033446
TCONS_00068775 lncRNA downstream 519533 7554760 ~ 7563288 (+) False XLOC_033450
TCONS_00065461 mRNA upstream 9550 6915609 ~ 6932033 (+) True XLOC_033438
TCONS_00065460 mRNA upstream 32943 6879534 ~ 6908640 (+) True XLOC_033437
TCONS_00065459 mRNA upstream 141019 6756273 ~ 6800564 (+) True XLOC_033436
TCONS_00065456 mRNA upstream 273159 6652967 ~ 6668424 (+) True XLOC_033434
TCONS_00065455 mRNA upstream 419826 6480212 ~ 6521757 (+) True XLOC_033433
TCONS_00065468 mRNA downstream 13018 7048245 ~ 7131865 (+) False XLOC_033440
TCONS_00065470 mRNA downstream 116605 7151832 ~ 7249789 (+) True XLOC_033442
TCONS_00065471 mRNA downstream 244676 7279903 ~ 7373059 (+) False XLOC_033445
TCONS_00065472 mRNA downstream 434535 7469762 ~ 7495887 (+) True XLOC_033447
TCONS_00065473 mRNA downstream 459807 7495034 ~ 7507488 (+) False XLOC_033448
TCONS_00065458 other upstream 140894 6756206 ~ 6800689 (+) False XLOC_033436
TCONS_00065457 other upstream 243492 6697973 ~ 6698091 (+) True XLOC_033435
TCONS_00065428 other upstream 1371389 5569548 ~ 5570194 (+) False XLOC_033402
TCONS_00065420 other upstream 1751687 5189778 ~ 5189896 (+) True XLOC_033396
TCONS_00065416 other upstream 1942312 4998793 ~ 4999271 (+) True XLOC_033393
TCONS_00065469 other downstream 13029 7048256 ~ 7093901 (+) True XLOC_033440
TCONS_00065483 other downstream 736938 7772165 ~ 7772378 (+) True XLOC_033453
TCONS_00065484 other downstream 743736 7778963 ~ 7779176 (+) True XLOC_033454
TCONS_00065492 other downstream 1393727 8428954 ~ 8429919 (+) True XLOC_033460
TCONS_00065497 other downstream 1635238 8670465 ~ 8681181 (+) True XLOC_033464

Expression Profile

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