RNA id: TCONS_00065465


Basic Information

Item Value
RNA id TCONS_00065465
length 2118
RNA type mRNA
GC content 0.45
exon number 8
gene id XLOC_033441
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 6990510 ~ 7011961 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTATCAACGTGCGATCTGGAGATGGACACAAACAGAGCAGCGAAGCTTGAGTTTGCGGTGCAGATGTCATGTGACAGCTGTGTTAATGCAGTAAAAGCCGTCCTGGAGAAAGATCCAGgagtgCAGTCAGTGCAGGTAAACCTGTCTAAGGAGGAGGTTTTGGTGGAAACGGCTCTGACGTCTCTTCAGGTCCAGACTCTGATCGAGAGCACCGGCAGACGAGCCGTGCTGAAGGGAATGGGAGGATCAGACTCAGACCTGGGGGCTGCCGTGGCAATGCTGAGTGGGGCGGGGCTTGTCCAGGGCGTGGTCAGATTCCTGCAGCTGTCACATGACCGCTGTTTGATTGACGGGACGATCGACGGACTGAGCCCTGGGGCTCACGGTCTGCATGTGCATGAACTGGGGGATCTCACACAGGACTGCAGGAGTTGTGGAGATCATTTCAATCCATTCAGGAAGCAGCATGGAGCTCCACAGGACTCTGACAGGCATGTTGGGGATCTGGGAAACATCAGCGCTGGTCCAGACGGCAGAGCTTCATTCAGACTGGAGGACTCTCAGATCAAGGTATGGGATGTGATCGGCCGCTCTCTGGTGGTGGATTCAGGAGAGGATGATCTGGGTCGAGGGAATCACCCGCTGTCCAAAACCACTGGAAACTCCGGAGAAAGACTAGCATGTGGGATCATCGCTCGCTCCGCCGGGCTCTTTCAGAACCCCAAGCAGATCTGTGCCTGCGATGGAGTGACGCTGTGGGAGGAGAGAGACCGTCCCATCGCCGGCAAAGGACGCAGAGTCGAAACACACACCTCTCATCTGTGACCATTGCACACACGCACGCGACCAGAAGGAGATTATTCCTGACCAATGAGAGCCTGAGCCAGTGTCTGAGGTGTGCACGCCCCCGACACACACACGACACCACATGCTGATTATCATATATCTAGATCTCTAGAAAACATCACAGTGATTGTGTTTTAGTCTGTTTGATTGTTCGTCCTGCTGCTGAATCACAGTTTCAATGTAGAAAAAAGTAAACAGGTAATACTTTATTTGTAGGCTCATACATGCTTGCCATTTGATAACATTATTGATTTGAAATCTCACTCGCTTTACAATGAGGGttggatttactaacataaactatgAATGAACAACACTTCACATTGTTTATTAATCATActtcaacatttattattaatgcatttttaaaatgtaaagttttgtgtttgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgcgtgcaaatgtgtgtattaatgcattattgcattattattacagAATTGAATAActcataataatattttatgtctCTCGTTAGTCTCATGATAacagaaattaaatatgaaaacagcacttctggaggaactatgacgtcactttgttgGTTAATctgctgctagcataaaactggttcccttgATAAAATCCCTGTAGGGTTTTCCCATAGGCTTtacgaagattgcaaataataagctctgtgttcaaacactgttcattacgcTAAcatgttttgtccagccggataatccttaCCAAGTGGCAACCTCCCGATCTCCCTCAGAaagccaatatggaagtaactgaaactgcaattcatctgaaattcaGCTAGTCcgggccgctcctggctccaaaacagagcaaatttcaattgagcccactgttagaatggccaactttacagcagaaaaaaaggtgtttacagcctggtacaaaaaagattttggttaatacagctaatattacccttcatgacaactgtgaggggggtgaatttttaaataactcatcagtttcctttatattaagttatattaagtttgcataattaagggcgtggccacttgagtgacagctaggtctcgttggtcgccgtcacctcagctgaatcctgcagattagccactgatctcggcatatttatcgtatttctgtgttgttttatgtggctttacacagtcaactgccttttggacttgtttcctacaattattagatggcatggcatgctgagtgcacttaattgtgctcacaaaccatttacgtggcctccgtttcccatgtgagtaaagttatatactcat

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0019430 removal of superoxide radicals biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004784 superoxide dismutase activity molecular_function
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis
ko05022 Pathways of neurodegeneration - multiple diseases

ZFIN:

id description
ZDB-GENE-050417-322 Predicted to enable copper ion binding activity. Predicted to be involved in removal of superoxide radicals. Predicted to act upstream of or within metal ion transport and superoxide metabolic process. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human CCS (copper chaperone for superoxide dismutase).

Ensembl:

ensembl_id ENSDART00000138948

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068550 lncRNA upstream 737849 6249392 ~ 6252661 (+) True XLOC_033429
TCONS_00068770 lncRNA upstream 747080 5978658 ~ 6243430 (+) True XLOC_033427
TCONS_00068549 lncRNA upstream 933148 6053845 ~ 6057362 (+) True XLOC_033428
TCONS_00068548 lncRNA upstream 1043383 5943810 ~ 5947127 (+) True XLOC_033416
TCONS_00068547 lncRNA upstream 1163010 5826581 ~ 5827500 (+) True XLOC_033406
TCONS_00068771 lncRNA downstream 253721 7265682 ~ 7275388 (+) True XLOC_033443
TCONS_00068772 lncRNA downstream 263890 7275851 ~ 7279896 (+) True XLOC_033444
TCONS_00068773 lncRNA downstream 300745 7312706 ~ 7315975 (+) True XLOC_033445
TCONS_00068774 lncRNA downstream 408251 7420212 ~ 7422923 (+) True XLOC_033446
TCONS_00068775 lncRNA downstream 542799 7554760 ~ 7563288 (+) False XLOC_033450
TCONS_00065461 mRNA upstream 58477 6915609 ~ 6932033 (+) True XLOC_033438
TCONS_00065460 mRNA upstream 81870 6879534 ~ 6908640 (+) True XLOC_033437
TCONS_00065459 mRNA upstream 189946 6756273 ~ 6800564 (+) True XLOC_033436
TCONS_00065456 mRNA upstream 322086 6652967 ~ 6668424 (+) True XLOC_033434
TCONS_00065455 mRNA upstream 468753 6480212 ~ 6521757 (+) True XLOC_033433
TCONS_00065466 mRNA downstream 7950 7019911 ~ 7043133 (+) False XLOC_033439
TCONS_00065467 mRNA downstream 15238 7027199 ~ 7036566 (+) True XLOC_033439
TCONS_00065468 mRNA downstream 36284 7048245 ~ 7131865 (+) False XLOC_033440
TCONS_00065470 mRNA downstream 139871 7151832 ~ 7249789 (+) True XLOC_033442
TCONS_00065471 mRNA downstream 267942 7279903 ~ 7373059 (+) False XLOC_033445
TCONS_00065458 other upstream 189821 6756206 ~ 6800689 (+) False XLOC_033436
TCONS_00065457 other upstream 292419 6697973 ~ 6698091 (+) True XLOC_033435
TCONS_00065428 other upstream 1420316 5569548 ~ 5570194 (+) False XLOC_033402
TCONS_00065420 other upstream 1800614 5189778 ~ 5189896 (+) True XLOC_033396
TCONS_00065416 other upstream 1991239 4998793 ~ 4999271 (+) True XLOC_033393
TCONS_00065469 other downstream 36295 7048256 ~ 7093901 (+) True XLOC_033440
TCONS_00065483 other downstream 760204 7772165 ~ 7772378 (+) True XLOC_033453
TCONS_00065484 other downstream 767002 7778963 ~ 7779176 (+) True XLOC_033454
TCONS_00065492 other downstream 1416993 8428954 ~ 8429919 (+) True XLOC_033460
TCONS_00065497 other downstream 1658504 8670465 ~ 8681181 (+) True XLOC_033464

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000343_00487812_00497022.mRNA True 1776 mRNA 0.49 11 CI01000343 487812 ~ 497472 (+)