G1737927 (LOC106608986)


Basic Information

Item Value
gene id G1737927
gene name LOC106608986
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40764293 ~ 40792490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1990308
aagagcatctgctaaattactaaaatgtaaaatcaGTGTGAACGGTCAGGCTTCTAGGTTTAGGGTGTAGTAGTTGGCTATTCCCTATTGGGAGTGAAGGGGCTGGTTCATTGTCAGATCATAAGAAGGTCCAATGGGACATGGGGTGGACTCTcctttcctcacctctcctcttaaATTGTGCTTAGAAGGTATGAGAGctttcaaatacacacacacacacttgcacataaACACAgtcagaaacaaacacacacacacaacctaaaaATTGCCTTGTTCACGTACACTATCCAAGTACCTTCCACTGCATGACAGAATTACAGATAGCATTAATTCCCGCTCACATCTTCTGGAACAAAAAGCACCCTCATAGCTCCAAATTCAGACATGCTATTGGTTCTCGGCTGTCAATCTGACACACAGACATGCTATTGGTGCTTTCAGCTGTCAGTCATGATCAGTGCATCACTCTAGGGCTATGCAATGCCTACATCTAGTGATCACAAAACATGTATAGTATGCTTGTCCAAGAAGGTATTAGCTAGCTTATCCCTTTGATAAAGACTCAAGTATGTTAGTAGTGTATGTATGCAGGTAAATGTATGTCATCATAAACCCCATAGCACAGTGACCCCCGAAGATGTTATTTTTTACAGGGGCAGCCATAGTGGTACAGTGCCCCTGAAGCAAATTAGGGGTTAAGTGCCttcctcaagggcacatcaacagatttttcaccttattGATGGTCAAGTCTGGAACTGCCATCAGCATTGGACGCACTGATTTACAGTTACTGATTTAATGGCATAGTTCACTCACTCATACAATGTCACTCTTCATCAGCCATCCCCATCTTCATTATCATCCTCTGCTATTCCTCATCAGCtacatcacaaacacacatgtaCCAACAAACTCATCTTCACATATAAAAGAAAAAGGAAACATCTATTTTCACATGAGCTGAAATCAGATACACTTTTAAACAGGGCCAATGGAAGAAAGTATCTACCTGGCAACAGCGAGGAGGAAGTAGATTCTCACTGGCCGTTGCTATGGTTAAGGATCAAGTGACCAATGAGAAACTTCAACCCTTCACTGAGGCAGGTCACAAAAAGAAAAAATGAAAAAGACCAAACATGTTTTATTAAAAGAGTTGACAGACACACATTTTCATTTGAAGTATTTCTGCTGTAGTCTTTTTCCCCCTTGTATTTCATACTTCAAAAATAAagatcattttttaaataatattactatGACATTATTGTCATTGTCATGATTAATAGTGTTAATATCATCATAATCTTTCTCATCATCATAATTATTTCTACTGGTGAACACTACGGTGAGATCACTACAGGCCACTTCCACTCTCTAGGTTAATAGGCTCTATTGGCTAACAGATGTTCtgatagagggggagaaaggactgcCGACGCCCCTAAAACACACGTTCCTTGCTACCCTTTTCCTTATATTCCCTCCCTTGTTCCTAAAAACTTCCTTTCTTCCATTCCCGTTTTTCGTTTATCCATTCCCTTTACCCTTCGCTGTCTGGGTGAAGAGATTAATAGATGACAGTGTTTAAGTAACTGTCTTtcattctccctctgtccctctctctctctctcttcagcagGACACCTCCATGGTATGGGAGGGGCTGGGGGGCATCTGCCCACCCtgagagctctgagacagggtaCGAGAACGCTCGCGCTCCCCCTCCATGGAGTAAGAGGAAGACAGCGAGGTGGTGCGCGAACGAGACAGGCGGGTCATGACGGATGATGCCACtgtgggagagggaagagggagggtggaa
>TU1990313
aagagcatctgctaaattactaaaatgtaaaatcaGTGTGAACGGTCAGGCTTCTAGGTTTAGGGTGTAGTAGTTGGCTATTCCCTATTGGGAGTGAAGGGGCTGGTTCATTGTCAGATCATAAGAAGGTCCAATGGGACATGGGGTGGACTCTcctttcctcacctctcctcttaaATTGTGCTTAGAAGGTATGAGAGctttcaaatacacacacacacacttgcacataaACACAgtcagaaacaaacacacacacacaacctaaaaATTGCCTTGTTCACGTACACTATCCAAGTACCTTCCACTGCATGACAGAATTACAGATAGCATTAATTCCCGCTCACATCTTCTGGAACAAAAAGCACCCTCATAGCTCCAAATTCAGACATGCTATTGGTTCTCGGCTGTCAATCTGACACACAGACATGCTATTGGTGCTTTCAGCTGTCAGTCATGATCAGTGCATCACTCTAGGGCTATGCAATGCCTACATCTAGTGATCACAAAACATGTATAGTATGCTTGTCCAAGAAGGTATTAGCTAGCTTATCCCTTTGATAAAGACTCAAGTATGTTAGTAGTGTATGTATGCAGGTAAATGTATGTCATCATAAACCCCATAGCACAGTGACCCCCGAAGATGTTATTTTTTACAGGGGCAGCCATAGTGGTACAGTGCCCCTGAAGCAAATTAGGGGTTAAGTGCCttcctcaagggcacatcaacagatttttcaccttattGATGGTCAAGTCTGGAACTGCCATCAGCATTGGACGCACTGATTTACAGTTACTGATTTAATGGCATAGTTCACTCACTCATACAATGTCACTCTTCATCAGCCATCCCCATCTTCATTATCATCCTCTGCTATTCCTCATCAGCtacatcacaaacacacatgtaCCAACAAACTCATCTTCACATATAAAAGAAAAAGGAAACATCTATTTTCACATGAGCTGAAATCAGATACACTTTTAAACAGGGCCAATGGAAGAAAGTATCTACCTGGCAACAGCGAGGAGGAAGTAGATTCTCACTGGCCGTTGCTATGGTTAAGGATCAAGTGACCAATGAGAAACTTCAACCCTTCACTGAGGCAGGTCACAAAAAGAAAAAATGAAAAAGACCAAACATGTTTTATTAAAAGAGTTGACAGACACACATTTTCATTTGAAGTATTTCTGCTGTAGTCTTTTTCCCCCTTGTATTTCATACTTCAAAAATAAagatcattttttaaataatattactatGACATTATTGTCATTGTCATGATTAATAGTGTTAATATCATCATAATCTTTCTCATCATCATAATTATTTCTACTGGTGAACACTACGGTGAGATCACTACAGGCCACTTCCACTCTCTAGGTTAATAGGCTCTATTGGCTAACAGATGTTCtgatagagggggagaaaggactgcCGACGCCCCTAAAACACACGTTCCTTGCTACCCTTTTCCTTATATTCCCTCCCTTGTTCCTAAAAACTTCCTTTCTTCCATTCCCGTTTTTCGTTTATCCATTCCCTTTACCCTTCGCTGTCTGGGTGAAGAGATTAATAGATGACAGTGTTTAAGTAACTGTCTTtcattctccctctgtccctctctctctctctcttcagcagGACACCTCCATGGTATGGGAGGGGCTGGGGGGCATCTGCCCACCCtgagagctctgagacagggtaCGAGAACGCTCGCGCTCCCCCTCCATGGAGTAAGAGGAAGACAGCGAGGTGGTGCGCGAACGAGACAGGCGGGTCATGACGGATGATGCCATGTAGCCCCTCCAGAAAAGCTCGATGTTCATGAGGTTGGGGGCTTTAGAGATGCGATCTCTGTGTGACTTCACCAGGTCTGCGTTAGCTGACATCTCCTCctgactgaaGAGATGACTCAAGATCTGCTCTGTGAGAGAGGATGTCAGGGTAGTGATCTTCTGGGCAGCCCAGTCCATCCACCCTCTAGCCTGAGGGTCAATGTTGACGAGAACGAGACCTTCAACTGAGTCTGGGTGGGCCATTGTGAACCTGGAGAGAATGTACGCCCCAGCTCCCACGCCAACTCCGATGACAGAACGGAAATTGAAATATGTCAGGACTGCAGGGATCATCTCTGCAATTTGCTCCATGGACGGATACTGGAATCCCATAGGATAGGTGGCGGCCCCCTCCTCTTGGCCAGGAGCATCAATGTGGACCAGAGTGAAGTTTTTCACTATCTCCTGCATCTCCTCAAATttaaacagaggagagaagcagCTTTactgTCCAGGCCCACATCGTGGAAGGTGAGGATGGCGGGACGGCGTGTGTTAGAGGTTCCATGGAGAGTCACGTGGAGGAGACCATGAGGTGTCTCAATACTGTGTTCCTGGCCCTGGTCCAACAGTATTCGAGCTGCAGCCTCAGCATCCTTTGCAGGATCGGGCTGACCCGGAAGTAAAGGCTTCTCCTCCGTAATGGCGATCTCCTGCATCTCAGTCGTCATGGCGTCACTTGTTCACGTCCCTCGTCGGAAGCTCCCGACAGTCTTTCTTGATATTTCACTTTCGTCCACGTTTATTTTTCGCtgatcgtttttttttttacagtcctTTCTCCAGTAGGAAGAAAAATCCTACAATAATATGGACCCGTCAATCAAGCGACAAGTTACTTTACTATGATATTAGGGGAGGACAACTATGTTGTTATCAGGCATATCCGTTAGGCTGCCAATATTTAGAATATATTTTCATAAAAGCTTCAAACTGCAGGACTGTATCCTAAACGGATAACTACAACGGTTATCTTAACGACTAAATGGCGATGTGATATTGGCGAAAACTCTTCGTCTCACCCTCGGCTCCCCCTCTCTCGGTTATGGTAGGCGCCCGTTGTTGAAATTACTTGTGGAACGAAACGCGAAC
>TU1990314
aagagcatctgctaaattactaaaatgtaaaatcaGTGTGAACGGTCAGGCTTCTAGGTTTAGGGTGTAGTAGTTGGCTATTCCCTATTGGGAGTGAAGGGGCTGGTTCATTGTCAGATCATAAGAAGGTCCAATGGGACATGGGGTGGACTCTcctttcctcacctctcctcttaaATTGTGCTTAGAAGGTATGAGAGctttcaaatacacacacacacacttgcacataaACACAgtcagaaacaaacacacacacacaacctaaaaATTGCCTTGTTCACGTACACTATCCAAGTACCTTCCACTGCATGACAGAATTACAGATAGCATTAATTCCCGCTCACATCTTCTGGAACAAAAAGCACCCTCATAGCTCCAAATTCAGACATGCTATTGGTTCTCGGCTGTCAATCTGACACACAGACATGCTATTGGTGCTTTCAGCTGTCAGTCATGATCAGTGCATCACTCTAGGGCTATGCAATGCCTACATCTAGTGATCACAAAACATGTATAGTATGCTTGTCCAAGAAGGTATTAGCTAGCTTATCCCTTTGATAAAGACTCAAGTATGTTAGTAGTGTATGTATGCAGGTAAATGTATGTCATCATAAACCCCATAGCACAGTGACCCCCGAAGATGTTATTTTTTACAGGGGCAGCCATAGTGGTACAGTGCCCCTGAAGCAAATTAGGGGTTAAGTGCCttcctcaagggcacatcaacagatttttcaccttattGATGGTCAAGTCTGGAACTGCCATCAGCATTGGACGCACTGATTTACAGTTACTGATTTAATGGCATAGTTCACTCACTCATACAATGTCACTCTTCATCAGCCATCCCCATCTTCATTATCATCCTCTGCTATTCCTCATCAGCtacatcacaaacacacatgtaCCAACAAACTCATCTTCACATATAAAAGAAAAAGGAAACATCTATTTTCACATGAGCTGAAATCAGATACACTTTTAAACAGGGCCAATGGAAGAAAGTATCTACCTGGCAACAGCGAGGAGGAAGTAGATTCTCACTGGCCGTTGCTATGGTTAAGGATCAAGTGACCAATGAGAAACTTCAACCCTTCACTGAGGCAGGTCACAAAAAGAAAAAATGAAAAAGACCAAACATGTTTTATTAAAAGAGTTGACAGACACACATTTTCATTTGAAGTATTTCTGCTGTAGTCTTTTTCCCCCTTGTATTTCATACTTCAAAAATAAagatcattttttaaataatattactatGACATTATTGTCATTGTCATGATTAATAGTGTTAATATCATCATAATCTTTCTCATCATCATAATTATTTCTACTGGTGAACACTACGGTGAGATCACTACAGGCCACTTCCACTCTCTAGGTTAATAGGCTCTATTGGCTAACAGATGTTCtgatagagggggagaaaggactgcCGACGCCCCTAAAACACACGTTCCTTGCTACCCTTTTCCTTATATTCCCTCCCTTGTTCCTAAAAACTTCCTTTCTTCCATTCCCGTTTTTCGTTTATCCATTCCCTTTACCCTTCGCTGTCTGGGTGAAGAGATTAATAGATGACAGTGTTTAAGTAACTGTCTTtcattctccctctctctctctctctctttttccctctacttctatctttctctctcctctctttactagCTTTGTCTGTTTTTCTTTGTTGttttccattctgtctctctcaccccctgtcttcacctttctctgtctcttgtcAATCTCTTTCTATCACACTGCCCCTACTATTCACATCTCGCTCAATCTTTATTCCGTTTCTCTCTCATTCAttcactccctctcttttccttttcatctctctcagactatctctctccatccaacaACAAGCCTCCAGTGAAAAGGGAAACAGGGTAAACAACCATGTTGGCAGGAGCTCCCCTCTCTCAtttggcc
>TU1990315
aagagcatctgctaaattactaaaatgtaaaatcaGTGTGAACGGTCAGGCTTCTAGGTTTAGGGTGTAGTAGTTGGCTATTCCCTATTGGGAGTGAAGGGGCTGGTTCATTGTCAGATCATAAGAAGGTCCAATGGGACATGGGGTGGACTCTcctttcctcacctctcctcttaaATTGTGCTTAGAAGGTATGAGAGctttcaaatacacacacacacacttgcacataaACACAgtcagaaacaaacacacacacacaacctaaaaATTGCCTTGTTCACGTACACTATCCAAGTACCTTCCACTGCATGACAGAATTACAGATAGCATTAATTCCCGCTCACATCTTCTGGAACAAAAAGCACCCTCATAGCTCCAAATTCAGACATGCTATTGGTTCTCGGCTGTCAATCTGACACACAGACATGCTATTGGTGCTTTCAGCTGTCAGTCATGATCAGTGCATCACTCTAGGGCTATGCAATGCCTACATCTAGTGATCACAAAACATGTATAGTATGCTTGTCCAAGAAGGTATTAGCTAGCTTATCCCTTTGATAAAGACTCAAGTATGTTAGTAGTGTATGTATGCAGGTAAATGTATGTCATCATAAACCCCATAGCACAGTGACCCCCGAAGATGTTATTTTTTACAGGGGCAGCCATAGTGGTACAGTGCCCCTGAAGCAAATTAGGGGTTAAGTGCCttcctcaagggcacatcaacagatttttcaccttattGATGGTCAAGTCTGGAACTGCCATCAGCATTGGACGCACTGATTTACAGTTACTGATTTAATGGCATAGTTCACTCACTCATACAATGTCACTCTTCATCAGCCATCCCCATCTTCATTATCATCCTCTGCTATTCCTCATCAGCtacatcacaaacacacatgtaCCAACAAACTCATCTTCACATATAAAAGAAAAAGGAAACATCTATTTTCACATGAGCTGAAATCAGATACACTTTTAAACAGGGCCAATGGAAGAAAGTATCTACCTGGCAACAGCGAGGAGGAAGTAGATTCTCACTGGCCGTTGCTATGGTTAAGGATCAAGTGACCAATGAGAAACTTCAACCCTTCACTGAGGCAGGTCACAAAAAGAAAAAATGAAAAAGACCAAACATGTTTTATTAAAAGAGTTGACAGACACACATTTTCATTTGAAGTATTTCTGCTGTAGTCTTTTTCCCCCTTGTATTTCATACTTCAAAAATAAagatcattttttaaataatattactatGACATTATTGTCATTGTCATGATTAATAGTGTTAATATCATCATAATCTTTCTCATCATCATAATTATTTCTACTGGTGAACACTACGGTGAGATCACTACAGGCCACTTCCACTCTCTAGGTTAATAGGCTCTATTGGCTAACAGATGTTCtgatagagggggcggcagggtagcctagtggttagagtgttggactaggaaccggaaggtt
>TU1990316
aagagcatctgctaaattactaaaatgtaaaatcaGTGTGAACGGTCAGGCTTCTAGGTTTAGGGTGTAGTAGTTGGCTATTCCCTATTGGGAGTGAAGGGGCTGGTTCATTGTCAGATCATAAGAAGGTCCAATGGGACATGGGGTGGACTCTcctttcctcacctctcctcttaaATTGTGCTTAGAAGGTATGAGAGctttcaaatacacacacacacacttgcacataaACACAgtcagaaacaaacacacacacacaacctaaaaATTGCCTTGTTCACGTACACTATCCAAGTACCTTCCACTGCATGACAGAATTACAGATAGCATTAATTCCCGCTCACATCTTCTGGAACAAAAAGCACCCTCATAGCTCCAAATTCAGACATGCTATTGGTTCTCGGCTGTCAATCTGACACACAGACATGCTATTGGTGCTTTCAGCTGTCAGTCATGATCAGTGCATCACTCTAGGGCTATGCAATGCCTACATCTAGTGATCACAAAACATGTATAGTATGCTTGTCCAAGAAGGTATTAGCTAGCTTATCCCTTTGATAAAGACTCAAGTATGTTAGTAGTGTATGTATGCAGGTAAATGTATGTCATCATAAACCCCATAGCACAGTGACCCCCGAAGATGTTATTTTTTACAGGGGCAGCCATAGTGGTACAGTGCCCCTGAAGCAAATTAGGGGTTAAGTGCCttcctcaagggcacatcaacagatttttcaccttattGATGGTCAAGTCTGGAACTGCCATCAGCATTGGACGCACTGATTTACAGTTACTGATTTAATGGCATAGTTCACTCACTCATACAATGTCACTCTTCATCAGCCATCCCCATCTTCATTATCATCCTCTGCTATTCCTCATCAGCtacatcacaaacacacatgtaCCAACAAACTCATCTTCACATATAAAAGAAAAAGGAAACATCTATTTTCACATGAGCTGAAATCAGATACACTTTTAAACAGGGCCAATGGAAGAAAGTATCTACCTGGCAACAGCGAGGAGGAAGTAGATTCTCACTGGCCGTTGCTATGGTTAAGGATCAAGTGACCAATGAGAAACTTCAACCCTTCACTGAGGCAGGTCACAAAAAGAAAAAATGAAAAAGACCAAACATGTTTTATTAAAAGAGTTGACAGACACACATTTTCATTTGAAGTATTTCTGCTGTAGTCTTTTTCCCCCTTGTATTTCATACTTCAAAAATAAagatcattttttaaataatattactatGACATTATTGTCATTGTCATGATTAATAGTGTTAATATCATCATAATCTTTCTCATCATCATAATTATTTCTACTGGTGAACACTACGGTGAGATCACTACAGGCCACTTCCACTCTCTAGGTTAATAGGCTCTATTGGCTAACAGATGTTCtgatagagggggagaaaggactgcCGACGCCCCTAAAACACACGTTCCTTGCTACCCTTTTCCTTATATTCCCTCCCTTGTTCCTAAAAACTTCCTTTCTTCCATTCCCGTTTTTCGTTTATCCATTCCCTTTACCCTTCGCTGTCTGGGTGAAGAGATTAATAGATGACAGTGTTTAAGTAACTGTCTTtcattctccctctgtccctctacctctcctttacATCCACGTTCCCATaaaaccttctctctctcagctggtcctctgccctctacccatccctcgctctctctccattccatcctccatccccctctctctctctctctctctctATCTCTCACACCCTCAGGGAGACATCAACCGAGCGCTCATATCTGAGCCAGCCTAGCAActacacacatacatgtacacacacaaaatataGTATATGCA
>TU1990311
AGGATGAGGGGTTATGTATGTAAGTACACTCACTGACCTTTGCAGGATCGGGCTGACCCGGAAGTAAAGGCTTCTCCTCCGTAATGGCGATCTCCTGCATCTCAGTCGTCATGGCGTCACTTGTTCACGTCCCTCGTCGGAAGCTCCCGACAGTCTTTCTTGATATTTCACTTTCGTCCACGTTTATTTTTCGCtgatcgtttttttttttacagtcctTTCTCCAGTAGGAAGAAAAATCCTACAATAATATGGACCCGTCAATCAAGCGACAAGTTACTTTACTATGATATTAGGGGAGGACAACTATGTTGTTATCAGGCATATCCGTTAGGCTGCCAATATTTAGAATATATTTTCATAAAAGCTTCAAACTGCAGGACTGTATCCTAAACGGATAACTACAACGGTTATCTTAACGACTAAATGGCGATGTGATATTGGCGAAAACTCTTCGTCTCACCCTCGGCTCCCCCTCTCTCGGTTATGGTAGGCGCCCGTTGTTGAAATTACTTGTGGAACGAAACGCGAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1990308 False 1834 lncRNA 0.43 2 40764293 40766271
TU1990313 False 2937 lncRNA 0.45 12 40764293 40792490
TU1990314 False 1950 lncRNA 0.41 2 40764293 40779045
TU1990315 False 1479 lncRNA 0.40 2 40764293 40787398
TU1990316 False 1854 lncRNA 0.41 2 40764293 40771088
TU1990311 True 533 lncRNA 0.44 2 40771140 40792490

Neighbor

gene id symbol gene type direction distance location
LOC110500409 LOC106599480 coding upstream 359453 40401452 ~ 40404840 (+)
LOC110500405 LOC100194596 coding upstream 411404 40322170 ~ 40352889 (+)
LOC118942929 NA coding upstream 507248 40255990 ~ 40257045 (+)
LOC110500400 LOC106608974 coding upstream 569819 40166092 ~ 40194474 (+)
LOC110500398 LOC106608973 coding upstream 605718 40137626 ~ 40158575 (+)
LOC110500418 NA coding downstream 1959 40794449 ~ 40837182 (+)
LOC110500419 LOC106608987 coding downstream 54502 40846992 ~ 40855143 (+)
LOC110500424 LOC106608992 coding downstream 257699 41050189 ~ 41058764 (+)
LOC110500425 LOC106608993 coding downstream 315956 41108446 ~ 41125934 (+)
LOC110500427 LOC106608994 coding downstream 338336 41130826 ~ 41183998 (+)
G1737936 NA non-coding upstream 78460 40685620 ~ 40685833 (+)
G1737923 NA non-coding upstream 81479 40654780 ~ 40682814 (+)
G1737905 NA non-coding upstream 88670 40612099 ~ 40675623 (+)
G1737865 NA non-coding upstream 213673 40548194 ~ 40550620 (+)
G1737845 LOC106608980 non-coding upstream 243449 40515981 ~ 40520844 (+)
G1738034 NA non-coding downstream 64100 40856590 ~ 40856726 (+)
G1738047 NA non-coding downstream 115733 40908223 ~ 40908672 (+)
G1738048 LOC100380853 non-coding downstream 116251 40908741 ~ 40909526 (+)
G1738049 LOC100380853 non-coding downstream 117351 40909841 ~ 40910518 (+)
G1737866 LOC103384823 other upstream 210440 40552011 ~ 40553853 (+)
G1737353 NA other upstream 700968 40062706 ~ 40063325 (+)
G1736484 LOC106608963 other upstream 887343 39875756 ~ 39876950 (+)
G1736098 NA other upstream 1474623 39233664 ~ 39289670 (+)
G1738057 LOC100194703 other downstream 200665 40955050 ~ 40997320 (+)
G1738119 NA other downstream 232220 41024710 ~ 41029136 (+)
G1739103 NA other downstream 1096321 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 1492566 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 1562087 42354556 ~ 42370239 (+)

Expression


Co-expression Network