G1760926 (LOC106608403)


Basic Information

Item Value
gene id G1760926
gene name LOC106608403
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 63823231 ~ 63832109 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2016922
TTTCAGAATCATAAAAATGGTATTATAAAAGCCAGTTTCTACATATGgtttcaattaaaaaaataaaacagaacagtgtgttttaaaaaaCAGTTACAACACGTGATAATATTGAAGAGCCTGGACACCACACAACCCTGGGAACAGCAGCATCCTCCTGGAGATACAGAGCTCTGCTATTGGACATGTTGGCCCACAGCAACGGTTACCAGGGTTACAGATTTTTAAGATGATGAGTAATCATTTACGCGTGATAATATAAGTCCCCTACGGGTTGTGTCTGGTCCAGCCCAGCTCTAACTAACCTTTGACCCCTGACCTAGGGCCAGTCCTCCAGGGTCactgacaggcacacacacacgcacacctttCAACCAATCAGATTCCTCCTCTGGAACTGGGTGTGTTTTAGCTTGCCGTGACCCCGGGTGGGCGGAGCTTAGAGGGCGAGGTAAAACACACATACTGCTCCTACAGGCTGGAACACAACACTAACAGCTCTACTCGTCATCATCATCGTCCTCTTCATCGTCATCGTCCTCCAGGTCATCGTCGTCGTCATCATCGTCATCTCCGCCACCGGCCGCGGCGTGGGGCATTATACCAGACGAGCCCCCGGGACCGGGTCGCATCGGGGCCCGCTTAACGTTCGCACCGGACCGGTATGCAGCcatatcCTTGTCGTATTTCTCCCTCAGTCGGAGAGCCTTCTCTTCAAACGGCTGTTTCTGGGTTGGAGTCTGTTGACCCCACATGATCCCCAGCTTCTTAGCTGTCTCTCCTATAGAACAGCCTGGGAACTCCTGTTTGACCGTAGGACGGAACtctgcagagaacacaaagaagGCAGacgGGGGTCGTTTGGGAGCGTTGGGGTCCTTCTTCCTCCTACCACTCTTGGCCATCCCCTTGGGGGGGACGTACCCCCTCATGTCCCTCTCATAACGCACCTTGTCGTTCTTCGCCATGTCCTCAAAACGACGCTTATCATTCGCAGTCAGACCcctccatctctctgaacACTGCTTGGAGAACTCCGCGAAGTTGACCGACTGTTCGGGGTGTTTCCTCTTGTGTTCCTCCCGGCAGGTCTGGACGAAGAAGGCGTAGGCTGACGTCTTGCCCTTTGGCTTGTTAACGTCCCCTTTCACCATGGCGACACGACTGACTGAAACACCGGAGAAAATATACATTTACGacaatatctttttttttttttgcaaattcatCTAGCTAGTGGCTAACTAGCTAGGCCCCACGCCGGATAAAACGTCAAAAAAGTACAAAtggatagttagctagctaactattgtAACGGCAACTAATGTTGTGCTTGTATATGTGATGGATTGCAGACCAGGTGCCGCAGACTGTATAGTTTGCAGTGCGGTTAGCCTAGTTAGCCAACTAGCATGCTAACTCGTTGAGAACAATGGGGCCACCATTTGCTTCCCGCCTAACGCGCTGCTAGCTCATCCCATCCCCCAGCGCTAGCATTTATGCTAAAGATGCTAACGCGCTGCTAGCTCATTCCATCCCACAGCGCTAGCATTTATGCTAAAGATGCTAACGCGATGCTAGATCATCCCATCCCCCAGCGCTAGTGTTTATGCTAAAGATGCTAACGCTAGCCATCAGAATAcatagttagctaacattagctagtgtgAAACATTTTACAGTATAGTTACGAGTAATCATAAAGCAAGGTTATTTtacatctttaaaaaaaacaacaaccc

Function

NR:

description
high mobility group protein B2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2016922 True 1742 lncRNA 0.49 5 63823231 63832109

Neighbor

gene id symbol gene type direction distance location
zgc:158659 pik3ca coding upstream 9474 63664023 ~ 63813757 (+)
LOC110503296 LOC106592207 coding upstream 167740 63608671 ~ 63655491 (+)
LOC118942978 NA coding upstream 288669 63528908 ~ 63534562 (+)
si:ch73-265d7.2 NA coding upstream 451018 63363590 ~ 63372213 (+)
LOC110500814 LOC100194636 coding upstream 479617 63329511 ~ 63343614 (+)
ctc1 LOC106595900 coding downstream 446 63832555 ~ 63879982 (+)
tfr2 LOC106592655 coding downstream 61085 63893194 ~ 64066184 (+)
LOC110510008 LOC106562799 coding downstream 715833 64547942 ~ 64579984 (+)
LOC110509408 LOC106592366 coding downstream 833454 64665563 ~ 64705116 (+)
LOC118942982 NA coding downstream 878256 64705596 ~ 64715802 (+)
G1760927 NA non-coding upstream 740 63818472 ~ 63822491 (+)
G1760929 NA non-coding upstream 6150 63816295 ~ 63817081 (+)
G1761027 NA non-coding upstream 9964 63811671 ~ 63813267 (+)
G1761000 NA non-coding upstream 146765 63676156 ~ 63676466 (+)
G1760998 NA non-coding upstream 153426 63669599 ~ 63669805 (+)
G1761037 NA non-coding downstream 46657 63878766 ~ 63879538 (+)
G1761051 NA non-coding downstream 70721 63902830 ~ 63938838 (+)
G1761057 NA non-coding downstream 77913 63910022 ~ 63913524 (+)
G1761058 NA non-coding downstream 84873 63916982 ~ 63922935 (+)
G1761042 NA non-coding downstream 136015 63968124 ~ 63969064 (+)
G1760941 NA other upstream 271739 63549905 ~ 63551492 (+)
G1760865 NA other upstream 404972 63396272 ~ 63418259 (+)
G1760800 NA other upstream 607478 63210133 ~ 63215753 (+)
LOC110500813 tsc22d4 other upstream 794791 62991115 ~ 63050683 (+)
G1761231 NA other downstream 585328 64417437 ~ 64418064 (+)
LOC110500801 LOC106608413 other downstream 902599 64734656 ~ 64754522 (+)
LOC118942983 NA other downstream 922520 64754608 ~ 64760958 (+)
LOC110517355 NA other downstream 974537 64806646 ~ 64842255 (+)

Expression


Co-expression Network