Gene
RNA
| Item | Value |
|---|---|
| gene id | G1983498 |
| gene name | LOC106611479 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 41451438 ~ 41453063 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| N-lysine methyltransferase SMYD2-A-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2267649 | False | 348 | lncRNA | 0.47 | 2 | 41451438 | 41452966 |
| TU2267647 | False | 278 | lncRNA | 0.49 | 2 | 41451508 | 41452966 |
| TU2267648 | True | 375 | lncRNA | 0.48 | 2 | 41451508 | 41453063 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110504259 | LOC106603281 | coding | upstream | 100689 | 41297432 ~ 41350749 (+) |
| si:ch211-132f19.7 | LOC106611404 | coding | upstream | 560326 | 40868101 ~ 40891112 (+) |
| dnajc27 | LOC106611405 | coding | upstream | 591384 | 40829046 ~ 40860054 (+) |
| pomca | LOC100510783 | coding | upstream | 628612 | 40819696 ~ 40822826 (+) |
| snx9a | LOC105031565 | coding | upstream | 709699 | 40689188 ~ 40741739 (+) |
| LOC110505965 | trim9 | coding | downstream | 94308 | 41547371 ~ 41622795 (+) |
| LOC110505964 | LOC106611459 | coding | downstream | 183093 | 41636156 ~ 41666062 (+) |
| LOC110505960 | LOC106611458 | coding | downstream | 224281 | 41677344 ~ 41737128 (+) |
| LOC110505959 | LOC106611457 | coding | downstream | 287110 | 41740173 ~ 41757394 (+) |
| LOC110504274 | LOC106611444 | coding | downstream | 328208 | 41781271 ~ 41937779 (+) |
| G1983493 | NA | non-coding | upstream | 9919 | 41441271 ~ 41441519 (+) |
| G1983483 | NA | non-coding | upstream | 25451 | 41421630 ~ 41425987 (+) |
| G1983488 | NA | non-coding | upstream | 31931 | 41419217 ~ 41419507 (+) |
| G1983484 | NA | non-coding | upstream | 42898 | 41408294 ~ 41408540 (+) |
| G1983481 | NA | non-coding | upstream | 44518 | 41406572 ~ 41406920 (+) |
| G1983514 | NA | non-coding | downstream | 32251 | 41485314 ~ 41485839 (+) |
| G1983536 | NA | non-coding | downstream | 60513 | 41513576 ~ 41520009 (+) |
| G1983541 | NA | non-coding | downstream | 72415 | 41525478 ~ 41525764 (+) |
| G1983542 | NA | non-coding | downstream | 72764 | 41525827 ~ 41526190 (+) |
| G1983543 | NA | non-coding | downstream | 73840 | 41526903 ~ 41527106 (+) |
| G1983499 | NA | other | upstream | 2098 | 41448402 ~ 41449340 (+) |
| G1983387 | NA | other | upstream | 234686 | 41215475 ~ 41216752 (+) |
| G1983277 | NA | other | upstream | 403536 | 41047551 ~ 41047902 (+) |
| G1982355 | NA | other | upstream | 1061031 | 40389658 ~ 40390407 (+) |
| G1983721 | NA | other | downstream | 609962 | 42063025 ~ 42103896 (+) |
| G1983777 | NA | other | downstream | 779177 | 42232240 ~ 42232904 (+) |
| G1983836 | NA | other | downstream | 809164 | 42262227 ~ 42262714 (+) |
| cn112 | cn112 | other | downstream | 966097 | 42419107 ~ 42454007 (+) |
