G1983533


Basic Information

Item Value
gene id G1983533
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 41626068 ~ 41628090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2267689
tattgaacctttattgaacctttattgaactagacaagtcagttaagaacacgtttTTATAATGCTTGATGTTTCACTCCTGTCTGTTTTAAAATAAGGGGCTACTGCAACGCAGCGTACCAATGCTCTTCCTGTAGATGACTGAATCCCAGGGTCCCATatagcaccctataccctatagaGTGAACTACTTTACACCCgtggccatagggctctggtcaaaagtagtgcactgactAGGGCAGCGGTTCTCAAAGTGGGGTACTGTAGGGTATCCGTTTTAgtagatctcaatatatacacttcatgaccaaaagtatgtggacacctactcgtcaaatatctcattccaaaatcacgggcaGTAATATGAAGTTTGTCCCCtttttgctgctgtaacagcctccactcttctgggaaggctttccactagatgttggaacattgctgctataacagcctccactcttctgggaaggctttccactagatgatggaacattgctgctataacatcctccactctactgggaaggctttccactagatgatggaacattgctgccataacaacctccactcttctgggaaggctttccactagatgttggaacattgctgctataacagcctccactcttctgggaaggctttcctgtagatgatggaacattgctgctataacagcctccactcttctgggaaggctttcctgtagatgatggaacattgctgcggggacttgcttccattcagccgcactgatgttgggctattaggcctggctcgaagtcggcgttctaattcatcccaaaggtgttcgatggggttgaggtcagggctctgtgcaggccagtcgagTTCTTCAACACCGttctcgacaaactatttctgtacggacctcgctttgtgcacgggggggcattgtcatgctgaaacaggaaagggccttccccaaactgttgccaccaagttggaagcacagaatcgtctagaatgtcattgtatgctgtagcgttaagatttcccttcactagaactaagggacctagcctgaaccatgaaaaacacggcagtcccgttctgtgagcttgtgtggcctaccacttcgcggctgagccgttgttgctcctagacgtttccacttcacaataacagcacttacagttgaccggggcagctctggcagggcagaaatgtcactaactgactgacttgtaggaaaagtggcatcctatgacggtgccacatttgaaagtcactgagctcttcagtaagggccattctactgccaatgtttgtctatggagattgcatgtctgtgtgctcgattttatacacctgtcagcaaacgggtgttgctgaaatagccaaatccactaatttgaaggggtgtccacatacttttttttacatATAGTCAATATTACTAACAACAACAGATTAAAATAATTTTGGCGAAGGGATCCGTGGAATAAGTTAAGAGAGtgtaatacaataaaatacaatgtaATTTTATTAATCTACACTTTTCTGTCCTCAACCCTGGGCCTGGGTGGCTTacagggatattggtatccacagtaCTCCACCAATTGTACATTTTTCAACTCGATTACCCCcccaaaatattatattttttacaaaCAGAAATGCGCTGTAATTTAAGCTTTAAAATGGCGATGATTTGTTTCTGCCTcgtggcaaaatgagtagaattgcagaaaattcgGCAACATTTTCTCGTTGCCAAGGAGATGGGTCTTTAAAACGTTCCTTCCTGGGATCAAAGACTTGGTTTGTCCGGCAACGCAATGCCAACGTCATAGTAGAAGTCCTCGAGTTTGAGAACCCCTTATCTAAGACATCGTTTTTTTGTACGATTGTTCTTGAAAATGCTctttatgtgaaggagatgtataGATGGATTGATTATTGATGTTTAGACAGAGTATCTTTGATTTTTTCATATAACATTGttgttcttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2267689 True 1988 lncRNA 0.44 2 41626068 41628090

Neighbor

gene id symbol gene type direction distance location
LOC110505965 trim9 coding upstream 3273 41547371 ~ 41622795 (+)
LOC110504259 LOC106603281 coding upstream 275319 41297432 ~ 41350749 (+)
si:ch211-132f19.7 LOC106611404 coding upstream 734956 40868101 ~ 40891112 (+)
dnajc27 LOC106611405 coding upstream 766014 40829046 ~ 40860054 (+)
pomca LOC100510783 coding upstream 803242 40819696 ~ 40822826 (+)
LOC110505964 LOC106611459 coding downstream 8066 41636156 ~ 41666062 (+)
LOC110505960 LOC106611458 coding downstream 49254 41677344 ~ 41737128 (+)
LOC110505959 LOC106611457 coding downstream 112083 41740173 ~ 41757394 (+)
LOC110504274 LOC106611444 coding downstream 153181 41781271 ~ 41937779 (+)
LOC110498275 sos2 coding downstream 317409 41945499 ~ 42020153 (+)
G1983569 NA non-coding upstream 24324 41601327 ~ 41601744 (+)
G1983565 NA non-coding upstream 34535 41591125 ~ 41591533 (+)
G1983554 NA non-coding upstream 67188 41557779 ~ 41558880 (+)
G1983543 NA non-coding upstream 98962 41526903 ~ 41527106 (+)
G1983542 NA non-coding upstream 99878 41525827 ~ 41526190 (+)
G1983583 NA non-coding downstream 27159 41655249 ~ 41655737 (+)
G1983584 NA non-coding downstream 33111 41661201 ~ 41661706 (+)
G1983612 NA non-coding downstream 102463 41730553 ~ 41778877 (+)
G1983630 NA non-coding downstream 126531 41754621 ~ 41755446 (+)
G1983614 NA non-coding downstream 130525 41758615 ~ 41759925 (+)
G1983499 NA other upstream 176728 41448402 ~ 41449340 (+)
G1983387 NA other upstream 409316 41215475 ~ 41216752 (+)
G1983277 NA other upstream 578166 41047551 ~ 41047902 (+)
G1982355 NA other upstream 1235661 40389658 ~ 40390407 (+)
G1983721 NA other downstream 434935 42063025 ~ 42103896 (+)
G1983777 NA other downstream 604150 42232240 ~ 42232904 (+)
G1983836 NA other downstream 634137 42262227 ~ 42262714 (+)
cn112 cn112 other downstream 791070 42419107 ~ 42454007 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G144114 NA non-coding NC_047603.1 CM018549.1 6273357 ~ 6280679 (-)
bowfin (Amia calva) G10034 NA non-coding CM030121.1 CM030121.1 56129442 ~ 56130558 (-)
tiger barb (Puntius tetrazona) G8309 NA non-coding NC_056700.1 CM032069.1 774259 ~ 776958 (-)